Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 NKAPP1-203ENST00000554109 573 ntTSL 4 BASIC18.08■□□□□ 0.48
RXRBP28702 LINC02130-201ENST00000566054 518 ntTSL 2 BASIC18.08■□□□□ 0.48
RXRBP28702 MIR4326-201ENST00000582203 59 ntBASIC18.08■□□□□ 0.48
RXRBP28702 AC003070.1-201ENST00000592389 457 ntTSL 2 BASIC18.08■□□□□ 0.48
RXRBP28702 SOX2-OT-228ENST00000597828 864 ntTSL 5 BASIC18.08■□□□□ 0.48
RXRBP28702 AC013472.3-201ENST00000607407 659 ntBASIC18.08■□□□□ 0.48
RXRBP28702 AC022296.3-201ENST00000608823 403 ntBASIC18.08■□□□□ 0.48
RXRBP28702 HIST1H4K-201ENST00000611927 312 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
RXRBP28702 PDLIM2-218ENST00000614502 599 ntTSL 2 BASIC18.08■□□□□ 0.48
RXRBP28702 Metazoa_SRP.47-201ENST00000616942 279 ntBASIC18.08■□□□□ 0.48
RXRBP28702 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
RXRBP28702 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RXRBP28702 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RXRBP28702 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RXRBP28702 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RXRBP28702 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC18.08■□□□□ 0.48
RXRBP28702 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.07■□□□□ 0.48
RXRBP28702 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
RXRBP28702 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
RXRBP28702 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
RXRBP28702 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RXRBP28702 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.07■□□□□ 0.48
RXRBP28702 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
RXRBP28702 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC18.07■□□□□ 0.48
RXRBP28702 HRASLS2-201ENST00000255695 742 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
RXRBP28702 RIPPLY2-201ENST00000369687 521 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
RXRBP28702 MIR602-201ENST00000384960 98 ntBASIC18.07■□□□□ 0.48
RXRBP28702 AL512444.1-201ENST00000419644 480 ntTSL 2 BASIC18.07■□□□□ 0.48
RXRBP28702 AC017081.1-201ENST00000420063 823 ntBASIC18.07■□□□□ 0.48
RXRBP28702 AP000281.2-201ENST00000427911 384 ntTSL 3 BASIC18.07■□□□□ 0.48
RXRBP28702 CXXC1P1-202ENST00000489409 1212 ntBASIC18.07■□□□□ 0.48
RXRBP28702 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC18.07■□□□□ 0.48
RXRBP28702 AIPL1-210ENST00000576307 1077 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RXRBP28702 RN7SL134P-201ENST00000579756 303 ntBASIC18.07■□□□□ 0.48
RXRBP28702 AC020909.3-201ENST00000598194 375 ntTSL 3 BASIC18.07■□□□□ 0.48
RXRBP28702 AC064862.6-203ENST00000605139 691 ntTSL 5 BASIC18.07■□□□□ 0.48
RXRBP28702 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RXRBP28702 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RXRBP28702 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RXRBP28702 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
RXRBP28702 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
RXRBP28702 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC18.07■□□□□ 0.48
RXRBP28702 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.07■□□□□ 0.48
RXRBP28702 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
RXRBP28702 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
RXRBP28702 SKAP1-208ENST00000584924 1477 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
RXRBP28702 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RXRBP28702 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RXRBP28702 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.06■□□□□ 0.48
RXRBP28702 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RXRBP28702 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
RXRBP28702 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RXRBP28702 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RXRBP28702 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RXRBP28702 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC18.06■□□□□ 0.48
RXRBP28702 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RXRBP28702 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
RXRBP28702 KRTAP10-4-201ENST00000400374 1643 ntAPPRIS P2 BASIC18.06■□□□□ 0.48
RXRBP28702 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RXRBP28702 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RXRBP28702 AC008038.1-201ENST00000634247 1314 ntBASIC18.06■□□□□ 0.48
RXRBP28702 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RXRBP28702 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.06■□□□□ 0.48
RXRBP28702 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC18.06■□□□□ 0.48
RXRBP28702 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
RXRBP28702 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RXRBP28702 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC18.06■□□□□ 0.48
RXRBP28702 OR52L1-201ENST00000332249 1094 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
RXRBP28702 SNORA30.1-201ENST00000363193 129 ntBASIC18.06■□□□□ 0.48
RXRBP28702 MRPL55-210ENST00000366736 660 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
RXRBP28702 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC18.06■□□□□ 0.48
RXRBP28702 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC18.06■□□□□ 0.48
RXRBP28702 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.06■□□□□ 0.48
RXRBP28702 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
RXRBP28702 GOSR1-205ENST00000467337 1011 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RXRBP28702 ARHGEF26-AS1-203ENST00000480639 582 ntTSL 2 BASIC18.06■□□□□ 0.48
RXRBP28702 AC011389.2-201ENST00000514811 365 ntTSL 2 BASIC18.06■□□□□ 0.48
RXRBP28702 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC18.06■□□□□ 0.48
RXRBP28702 CBX3P4-202ENST00000540428 423 ntTSL 2 BASIC18.06■□□□□ 0.48
RXRBP28702 SNHG15-210ENST00000585030 953 ntTSL 3 BASIC18.06■□□□□ 0.48
RXRBP28702 AL137028.2-201ENST00000614601 256 ntBASIC18.06■□□□□ 0.48
RXRBP28702 MIR4726-201ENST00000615971 58 ntBASIC18.06■□□□□ 0.48
RXRBP28702 GPHB5-202ENST00000621500 543 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
RXRBP28702 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
RXRBP28702 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RXRBP28702 AC046158.3-201ENST00000624947 2558 ntBASIC18.06■□□□□ 0.48
RXRBP28702 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RXRBP28702 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
RXRBP28702 ANP32B-201ENST00000339399 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RXRBP28702 PCDH8P1-201ENST00000428983 2773 ntBASIC18.06■□□□□ 0.48
RXRBP28702 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.06■□□□□ 0.48
RXRBP28702 CDK7-201ENST00000256443 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RXRBP28702 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC18.06■□□□□ 0.48
RXRBP28702 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RXRBP28702 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
RXRBP28702 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RXRBP28702 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC18.05■□□□□ 0.48
RXRBP28702 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
RXRBP28702 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RXRBP28702 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms