Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
COL5A3P25940 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
COL5A3P25940 LTA-213ENST00000418386 1422 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A3P25940 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17.23■□□□□ 0.35
COL5A3P25940 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A3P25940 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A3P25940 AC016397.2-201ENST00000624848 1985 ntBASIC17.23■□□□□ 0.35
COL5A3P25940 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A3P25940 AC008080.1-201ENST00000311067 1058 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A3P25940 GAST-201ENST00000329402 470 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A3P25940 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
COL5A3P25940 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC17.23■□□□□ 0.35
COL5A3P25940 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A3P25940 PEBP1P3-201ENST00000455475 548 ntBASIC17.23■□□□□ 0.35
COL5A3P25940 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC17.23■□□□□ 0.35
COL5A3P25940 CLNK-203ENST00000507719 1143 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A3P25940 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
COL5A3P25940 PIGH-210ENST00000560722 903 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
COL5A3P25940 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC17.23■□□□□ 0.35
COL5A3P25940 FAM90A28P-201ENST00000596881 489 ntTSL 5 BASIC17.23■□□□□ 0.35
COL5A3P25940 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC17.23■□□□□ 0.35
COL5A3P25940 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC17.23■□□□□ 0.35
COL5A3P25940 NR1I2-206ENST00000638727 1194 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
COL5A3P25940 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A3P25940 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A3P25940 CCDC159-209ENST00000588790 1408 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
COL5A3P25940 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A3P25940 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A3P25940 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A3P25940 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
COL5A3P25940 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC17.23■□□□□ 0.35
COL5A3P25940 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A3P25940 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.23■□□□□ 0.35
COL5A3P25940 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A3P25940 ZFHX4-AS1-201ENST00000518143 1711 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A3P25940 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A3P25940 APEX1-201ENST00000216714 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL5A3P25940 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A3P25940 COPS5-203ENST00000517736 1621 ntTSL 5 BASIC17.22■□□□□ 0.35
COL5A3P25940 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
COL5A3P25940 HAO1-201ENST00000378789 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A3P25940 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
COL5A3P25940 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A3P25940 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A3P25940 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A3P25940 PLA2G2E-201ENST00000375116 785 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A3P25940 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
COL5A3P25940 AL357079.1-203ENST00000412378 494 ntTSL 5 BASIC17.22■□□□□ 0.35
COL5A3P25940 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC17.22■□□□□ 0.35
COL5A3P25940 POLR2LP1-206ENST00000444785 187 ntBASIC17.22■□□□□ 0.35
COL5A3P25940 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC17.22■□□□□ 0.35
COL5A3P25940 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC17.22■□□□□ 0.35
COL5A3P25940 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC17.22■□□□□ 0.35
COL5A3P25940 SEPT4-AS1-203ENST00000580769 1000 ntTSL 3 BASIC17.22■□□□□ 0.35
COL5A3P25940 TMEM230-211ENST00000615008 594 ntTSL 4 BASIC17.22■□□□□ 0.35
COL5A3P25940 FAM157C-201ENST00000563357 1806 ntTSL 2 BASIC17.22■□□□□ 0.35
COL5A3P25940 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A3P25940 AC002350.2-201ENST00000623894 1828 ntBASIC17.22■□□□□ 0.35
COL5A3P25940 CYP2B6-202ENST00000593831 1426 ntTSL 2 BASIC17.22■□□□□ 0.35
COL5A3P25940 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A3P25940 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A3P25940 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
COL5A3P25940 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A3P25940 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC17.22■□□□□ 0.35
COL5A3P25940 AC008741.2-201ENST00000612792 3115 ntBASIC17.22■□□□□ 0.35
COL5A3P25940 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A3P25940 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
COL5A3P25940 LINC01744-201ENST00000457698 2042 ntTSL 2 BASIC17.22■□□□□ 0.35
COL5A3P25940 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC17.22■□□□□ 0.35
COL5A3P25940 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A3P25940 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
COL5A3P25940 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A3P25940 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL5A3P25940 FAHD2A-204ENST00000447036 1366 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
COL5A3P25940 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
COL5A3P25940 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC17.22■□□□□ 0.35
COL5A3P25940 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A3P25940 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
COL5A3P25940 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A3P25940 MUC1-207ENST00000368392 1032 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A3P25940 MUC1-208ENST00000368393 937 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A3P25940 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
COL5A3P25940 HDHD5-AS1-202ENST00000431923 616 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A3P25940 PDLIM2-212ENST00000443561 701 ntTSL 2 BASIC17.21■□□□□ 0.35
COL5A3P25940 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC17.21■□□□□ 0.35
COL5A3P25940 RPSAP16-201ENST00000447583 821 ntBASIC17.21■□□□□ 0.35
COL5A3P25940 MUC1-213ENST00000462215 1189 ntTSL 2 BASIC17.21■□□□□ 0.35
COL5A3P25940 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC17.21■□□□□ 0.35
COL5A3P25940 KRT18P42-201ENST00000505048 1255 ntBASIC17.21■□□□□ 0.35
COL5A3P25940 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL5A3P25940 Metazoa_SRP.147-201ENST00000576563 312 ntBASIC17.21■□□□□ 0.35
COL5A3P25940 RN7SL478P-201ENST00000584358 298 ntBASIC17.21■□□□□ 0.35
COL5A3P25940 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC17.21■□□□□ 0.35
COL5A3P25940 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC17.21■□□□□ 0.35
COL5A3P25940 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC17.21■□□□□ 0.35
COL5A3P25940 AL590094.1-206ENST00000635959 478 ntTSL 5 BASIC17.21■□□□□ 0.35
COL5A3P25940 AL590094.1-209ENST00000637260 499 ntTSL 5 BASIC17.21■□□□□ 0.35
COL5A3P25940 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC17.21■□□□□ 0.35
COL5A3P25940 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
COL5A3P25940 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms