Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 MIR1247-201ENST00000408206 136 ntBASIC13.05□□□□□ -0.32
USB1Q9BQ65 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 NME6-203ENST00000415644 849 ntTSL 2 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 RPSAP41-201ENST00000439695 860 ntBASIC13.05□□□□□ -0.32
USB1Q9BQ65 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 AC009245.1-201ENST00000456481 862 ntBASIC13.05□□□□□ -0.32
USB1Q9BQ65 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 SNRPGP1-201ENST00000553864 222 ntBASIC13.05□□□□□ -0.32
USB1Q9BQ65 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 AC007663.3-201ENST00000609632 465 ntBASIC13.05□□□□□ -0.32
USB1Q9BQ65 AC005695.3-201ENST00000614522 232 ntBASIC13.05□□□□□ -0.32
USB1Q9BQ65 AL136295.7-201ENST00000619226 1200 ntBASIC13.05□□□□□ -0.32
USB1Q9BQ65 AP001002.3-201ENST00000623482 206 ntBASIC13.05□□□□□ -0.32
USB1Q9BQ65 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 PROCR-201ENST00000216968 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 TRIM80P-201ENST00000455685 2848 ntBASIC13.05□□□□□ -0.32
USB1Q9BQ65 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 SULT2A1-201ENST00000222002 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 AC023024.2-201ENST00000623561 1993 ntBASIC13.05□□□□□ -0.32
USB1Q9BQ65 KRT8P29-201ENST00000420409 1371 ntBASIC13.05□□□□□ -0.32
USB1Q9BQ65 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 DPP10-201ENST00000310323 3052 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 DLX1-201ENST00000341900 2130 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 AC138028.6-201ENST00000616106 1482 ntBASIC13.04□□□□□ -0.32
USB1Q9BQ65 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 AGER-203ENST00000375065 665 ntTSL 2 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 MED20-203ENST00000409060 815 ntTSL 2 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 AC010141.1-201ENST00000411585 623 ntBASIC13.04□□□□□ -0.32
USB1Q9BQ65 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 FAM204CP-201ENST00000424489 642 ntBASIC13.04□□□□□ -0.32
USB1Q9BQ65 HIST2H2BB-201ENST00000449108 381 ntBASIC13.04□□□□□ -0.32
USB1Q9BQ65 LINC01297-202ENST00000453395 624 ntTSL 5 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 SCARNA20.5-201ENST00000516991 142 ntBASIC13.04□□□□□ -0.32
USB1Q9BQ65 TRAV11-201ENST00000539512 339 ntBASIC13.04□□□□□ -0.32
USB1Q9BQ65 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 AC015910.1-202ENST00000580264 633 ntTSL 5 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 AP005202.1-202ENST00000583065 748 ntTSL 5 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 AC020914.3-201ENST00000594712 304 ntBASIC13.04□□□□□ -0.32
USB1Q9BQ65 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 AL096828.3-201ENST00000615354 462 ntBASIC13.04□□□□□ -0.32
USB1Q9BQ65 AL136301.1-201ENST00000615830 422 ntBASIC13.04□□□□□ -0.32
USB1Q9BQ65 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 ABBA01031663.1-201ENST00000635630 790 ntBASIC13.04□□□□□ -0.32
USB1Q9BQ65 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
USB1Q9BQ65 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
USB1Q9BQ65 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms