Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 MYADML-201ENST00000474610 2147 ntBASIC13.66□□□□□ -0.22
VPS13AQ96RL7 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 ZC3H8-201ENST00000272570 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 KRT19P4-201ENST00000443208 943 ntBASIC13.65□□□□□ -0.22
VPS13AQ96RL7 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 AC090616.6-202ENST00000583601 1088 ntBASIC13.65□□□□□ -0.22
VPS13AQ96RL7 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 AC016590.1-201ENST00000588763 420 ntTSL 2 BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 AC063977.2-201ENST00000601996 421 ntBASIC13.65□□□□□ -0.22
VPS13AQ96RL7 SNX20-205ENST00000610485 557 ntTSL 5 BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 PGAP2-204ENST00000396991 1798 ntTSL 5 BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 OR2W2P-201ENST00000406313 909 ntBASIC13.65□□□□□ -0.22
VPS13AQ96RL7 ALG10-202ENST00000538927 571 ntTSL 5 BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 AC032044.1-201ENST00000570924 570 ntTSL 4 BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 BX510359.7-201ENST00000619819 630 ntBASIC13.65□□□□□ -0.22
VPS13AQ96RL7 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
VPS13AQ96RL7 OAZ3-201ENST00000321531 851 ntTSL 5 BASIC13.65□□□□□ -0.23
VPS13AQ96RL7 GYG1-209ENST00000483267 801 ntTSL 2 BASIC13.65□□□□□ -0.23
VPS13AQ96RL7 TATDN3-208ENST00000526997 794 ntTSL 3 BASIC13.65□□□□□ -0.23
VPS13AQ96RL7 TATDN3-213ENST00000531963 1291 ntTSL 1 (best) BASIC13.65□□□□□ -0.23
VPS13AQ96RL7 OSGIN1-206ENST00000565123 833 ntTSL 2 BASIC13.65□□□□□ -0.23
VPS13AQ96RL7 AL645940.1-201ENST00000606432 594 ntTSL 2 BASIC13.65□□□□□ -0.23
VPS13AQ96RL7 SALL4P6-201ENST00000429385 1691 ntBASIC13.65□□□□□ -0.23
VPS13AQ96RL7 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 HNRNPA3P12-201ENST00000437410 1063 ntBASIC13.64□□□□□ -0.23
VPS13AQ96RL7 SRP9P1-201ENST00000445874 261 ntBASIC13.64□□□□□ -0.23
VPS13AQ96RL7 AC139493.2-202ENST00000510155 544 ntTSL 3 BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 AC091691.1-201ENST00000583587 1018 ntBASIC13.64□□□□□ -0.23
VPS13AQ96RL7 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 AC002511.3-201ENST00000638098 420 ntBASIC13.64□□□□□ -0.23
VPS13AQ96RL7 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 AC069061.4-201ENST00000581294 1347 ntBASIC13.64□□□□□ -0.23
VPS13AQ96RL7 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 GAPDH-202ENST00000396856 1266 ntTSL 5 BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 AC092810.2-201ENST00000431570 362 ntBASIC13.64□□□□□ -0.23
VPS13AQ96RL7 EIF2B5-202ENST00000432569 984 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 ACTG1P23-201ENST00000437653 1074 ntBASIC13.64□□□□□ -0.23
VPS13AQ96RL7 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 FAM213AP2-201ENST00000521579 683 ntBASIC13.64□□□□□ -0.23
VPS13AQ96RL7 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 FGF21-202ENST00000593756 1312 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 SPC25-201ENST00000282074 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13AQ96RL7 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 MGST3-204ENST00000367888 778 ntTSL 3 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 BTF3-202ENST00000380591 1237 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 RBMX2P5-201ENST00000424312 969 ntBASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms