Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 AC072061.1-201ENST00000569710 2234 ntBASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 TUBB8P4-201ENST00000511806 1324 ntBASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 AC004241.5-201ENST00000623870 2448 ntBASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 MXI1-205ENST00000393134 889 ntTSL 2 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 ACTG1P3-201ENST00000431775 1114 ntBASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 AL355864.2-201ENST00000447420 863 ntBASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 CT45A11P-201ENST00000448043 1134 ntBASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 MIR6805-201ENST00000615055 62 ntBASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 MIR497HG-202ENST00000572453 3838 ntBASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 AGAP10P-201ENST00000454844 2418 ntBASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC13.47□□□□□ -0.25
DEPDC4Q8N2C3 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 LINC00685-201ENST00000391707 428 ntTSL 5 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 RPL28-204ENST00000431533 590 ntTSL 2 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 U91328.1-201ENST00000437528 223 ntBASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 UPF3AP2-201ENST00000457924 1132 ntBASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 AC022494.1-201ENST00000466044 728 ntBASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 RPL28-206ENST00000558752 671 ntTSL 3 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC13.46□□□□□ -0.25
DEPDC4Q8N2C3 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms