Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AF254983.2-201ENST00000612331 135 ntBASIC13.26□□□□□ -0.29
RNF4P78317 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
RNF4P78317 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNF4P78317 SNX18-202ENST00000343017 3140 ntBASIC13.26□□□□□ -0.29
RNF4P78317 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNF4P78317 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNF4P78317 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
RNF4P78317 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
RNF4P78317 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.25□□□□□ -0.29
RNF4P78317 BRD7P5-201ENST00000299197 1822 ntBASIC13.25□□□□□ -0.29
RNF4P78317 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC13.25□□□□□ -0.29
RNF4P78317 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
RNF4P78317 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.25□□□□□ -0.29
RNF4P78317 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC13.25□□□□□ -0.29
RNF4P78317 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
RNF4P78317 AC007952.5-201ENST00000572818 1486 ntBASIC13.25□□□□□ -0.29
RNF4P78317 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 BANF1P3-201ENST00000412556 261 ntBASIC13.25□□□□□ -0.29
RNF4P78317 AC007274.2-201ENST00000421675 662 ntBASIC13.25□□□□□ -0.29
RNF4P78317 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 AC026320.2-201ENST00000434379 478 ntBASIC13.25□□□□□ -0.29
RNF4P78317 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC13.25□□□□□ -0.29
RNF4P78317 UPF3AP2-201ENST00000457924 1132 ntBASIC13.25□□□□□ -0.29
RNF4P78317 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC13.25□□□□□ -0.29
RNF4P78317 AC116345.2-201ENST00000512837 523 ntBASIC13.25□□□□□ -0.29
RNF4P78317 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 KRT8P1-201ENST00000557533 1207 ntBASIC13.25□□□□□ -0.29
RNF4P78317 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC13.25□□□□□ -0.29
RNF4P78317 STUB1-204ENST00000564370 875 ntTSL 2 BASIC13.25□□□□□ -0.29
RNF4P78317 FGFR3P5-201ENST00000564496 886 ntBASIC13.25□□□□□ -0.29
RNF4P78317 AC026803.1-201ENST00000569130 274 ntBASIC13.25□□□□□ -0.29
RNF4P78317 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC13.25□□□□□ -0.29
RNF4P78317 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC13.25□□□□□ -0.29
RNF4P78317 PPA1-206ENST00000625364 644 ntTSL 5 BASIC13.25□□□□□ -0.29
RNF4P78317 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC13.25□□□□□ -0.29
RNF4P78317 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC13.25□□□□□ -0.29
RNF4P78317 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.25□□□□□ -0.29
RNF4P78317 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.25□□□□□ -0.29
RNF4P78317 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
RNF4P78317 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC13.25□□□□□ -0.29
RNF4P78317 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
RNF4P78317 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 TKT-201ENST00000296289 1931 ntTSL 5 BASIC13.25□□□□□ -0.29
RNF4P78317 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RNF4P78317 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
RNF4P78317 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC13.25□□□□□ -0.29
RNF4P78317 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
RNF4P78317 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
RNF4P78317 LINC01815-202ENST00000641468 1409 ntBASIC13.24□□□□□ -0.29
RNF4P78317 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC13.24□□□□□ -0.29
RNF4P78317 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC13.24□□□□□ -0.29
RNF4P78317 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC13.24□□□□□ -0.29
RNF4P78317 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC13.24□□□□□ -0.29
RNF4P78317 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC13.24□□□□□ -0.29
RNF4P78317 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC13.24□□□□□ -0.29
RNF4P78317 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC13.24□□□□□ -0.29
RNF4P78317 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC13.24□□□□□ -0.29
RNF4P78317 RN7SL769P-201ENST00000469386 295 ntBASIC13.24□□□□□ -0.29
RNF4P78317 IMP3P2-201ENST00000489760 475 ntBASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms