Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 AJ011931.1-201ENST00000618749 2492 ntBASIC13.68□□□□□ -0.22
VPS13AQ96RL7 AL109954.1-202ENST00000564051 2148 ntBASIC13.68□□□□□ -0.22
VPS13AQ96RL7 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 EDF1-201ENST00000224073 640 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 OR7E155P-201ENST00000412208 1014 ntBASIC13.67□□□□□ -0.22
VPS13AQ96RL7 AC010997.2-201ENST00000427610 260 ntTSL 3 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 AC105446.1-201ENST00000441882 407 ntTSL 3 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 AC138035.2-201ENST00000509192 727 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 ZNF850-201ENST00000589390 523 ntTSL 3 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 LINC02193-207ENST00000621799 723 ntTSL 5 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 AC069287.1-202ENST00000622626 723 ntTSL 5 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 COG6-212ENST00000630730 186 ntTSL 5 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 MECR-202ENST00000373791 2416 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 AC124319.4-201ENST00000622931 2161 ntBASIC13.67□□□□□ -0.22
VPS13AQ96RL7 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 ZNF684-201ENST00000372696 1009 ntTSL 3 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 TAC3-209ENST00000458521 816 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 AC114939.1-201ENST00000520980 514 ntTSL 5 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 AC027279.2-201ENST00000561938 793 ntTSL 5 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 MIR5193-201ENST00000584510 109 ntBASIC13.67□□□□□ -0.22
VPS13AQ96RL7 DUX4L33-201ENST00000635217 958 ntBASIC13.67□□□□□ -0.22
VPS13AQ96RL7 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 AC022532.1-201ENST00000624563 1728 ntBASIC13.67□□□□□ -0.22
VPS13AQ96RL7 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 LARP4-207ENST00000518561 1578 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 REG3G-202ENST00000393897 856 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 IGSF23-201ENST00000402988 989 ntAPPRIS P2 TSL 3 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 RN7SL487P-201ENST00000468140 344 ntBASIC13.67□□□□□ -0.22
VPS13AQ96RL7 BACE1-207ENST00000510630 1236 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS13AQ96RL7 AC005332.2-201ENST00000590010 930 ntBASIC13.67□□□□□ -0.22
VPS13AQ96RL7 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 AC012158.1-201ENST00000535684 1366 ntTSL 2 BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 CMTM5-204ENST00000382809 378 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 FOLR1-204ENST00000393681 1061 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 FAM25E-201ENST00000411791 322 ntTSL 3 BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 OR2A1-AS1-203ENST00000468575 568 ntBASIC13.66□□□□□ -0.22
VPS13AQ96RL7 METTL7AP1-201ENST00000547343 496 ntBASIC13.66□□□□□ -0.22
VPS13AQ96RL7 GABARAPL1-219ENST00000629504 379 ntTSL 4 BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 AC008993.3-201ENST00000633603 631 ntTSL 5 BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 DUT-208ENST00000559540 1441 ntTSL 2 BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 GZMH-201ENST00000216338 909 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 NR0B1-201ENST00000378963 475 ntTSL 2 BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 AC005011.1-201ENST00000455206 210 ntBASIC13.66□□□□□ -0.22
VPS13AQ96RL7 RN7SL794P-201ENST00000469816 280 ntBASIC13.66□□□□□ -0.22
VPS13AQ96RL7 DDX11L8-201ENST00000535849 366 ntBASIC13.66□□□□□ -0.22
VPS13AQ96RL7 CD276-217ENST00000564751 951 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS13AQ96RL7 MEP1AP1-201ENST00000636082 1097 ntBASIC13.66□□□□□ -0.22
VPS13AQ96RL7 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms