Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 AC093813.1-201ENST00000605066 256 ntBASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 UGT1A10-202ENST00000373445 2065 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 MGST3-203ENST00000367885 680 ntTSL 2 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 VDAC1P7-201ENST00000462417 847 ntBASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 DUX4L47-201ENST00000566374 394 ntBASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 AC120045.2-201ENST00000567334 178 ntBASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 AC008750.5-201ENST00000595500 473 ntTSL 2 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 AL022328.1-201ENST00000610050 478 ntBASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 ABBA01031660.1-201ENST00000635219 756 ntBASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 AMT-232ENST00000636199 1546 ntTSL 5 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 SMTN-203ENST00000358743 3198 ntAPPRIS P4 TSL 2 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
DEPDC4Q8N2C3 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms