Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC011431.1-201ENST00000512971 230 ntBASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 RN7SL121P-201ENST00000584223 273 ntBASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 AC092115.1-201ENST00000566277 1402 ntBASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 LILRP2-202ENST00000413572 1383 ntBASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 GULOP-201ENST00000454030 748 ntBASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 B9D1-206ENST00000461069 923 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 AC025594.1-201ENST00000469533 543 ntBASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 AC147876.1-201ENST00000504408 322 ntBASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 RN7SL524P-201ENST00000581152 300 ntBASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
CCDC88AQ3V6T2 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 KRT19P4-201ENST00000443208 943 ntBASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 PEBP1P3-201ENST00000455475 548 ntBASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 RPSAP70-201ENST00000504462 864 ntBASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 ABCC6P1-203ENST00000565566 1170 ntBASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 AC068760.1-201ENST00000493579 1953 ntBASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 AC007679.1-201ENST00000458609 502 ntBASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 EMP3-204ENST00000596315 761 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC88AQ3V6T2 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 KRT8P34-201ENST00000577607 1044 ntBASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms