Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 TMEM94-201ENST00000314256 5213 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
CKS1BP61024 AL121723.1-201ENST00000445194 1519 ntBASIC10.16□□□□□ -0.78
CKS1BP61024 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
CKS1BP61024 SLC39A13-204ENST00000524928 3553 ntTSL 2 BASIC10.16□□□□□ -0.78
CKS1BP61024 NUP62-208ENST00000596217 3590 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.78
CKS1BP61024 GRAMD1B-215ENST00000638086 2665 ntTSL 5 BASIC10.16□□□□□ -0.78
CKS1BP61024 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
CKS1BP61024 AC055811.4-201ENST00000624039 1754 ntBASIC10.16□□□□□ -0.78
CKS1BP61024 PPFIA4-201ENST00000272198 5045 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
CKS1BP61024 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
CKS1BP61024 HECTD4-202ENST00000377560 15759 ntAPPRIS P5 TSL 5 BASIC10.16□□□□□ -0.78
CKS1BP61024 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC10.16□□□□□ -0.78
CKS1BP61024 USP20-202ENST00000358355 4371 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
CKS1BP61024 GRM8-201ENST00000339582 4057 ntAPPRIS P3 TSL 5 BASIC10.16□□□□□ -0.78
CKS1BP61024 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
CKS1BP61024 GCC2-201ENST00000309863 7537 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
CKS1BP61024 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC10.16□□□□□ -0.78
CKS1BP61024 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC10.16□□□□□ -0.78
CKS1BP61024 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC10.16□□□□□ -0.78
CKS1BP61024 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC10.16□□□□□ -0.78
CKS1BP61024 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
CKS1BP61024 MTHFR-202ENST00000376583 7044 ntAPPRIS ALT1 TSL 5 BASIC10.15□□□□□ -0.78
CKS1BP61024 IKZF4-203ENST00000547167 2539 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 LINC01679-201ENST00000442815 2798 ntTSL 3 BASIC10.15□□□□□ -0.78
CKS1BP61024 ADAMTS20-201ENST00000389420 6076 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC10.15□□□□□ -0.78
CKS1BP61024 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 GRM4-202ENST00000374181 7275 ntTSL 5 BASIC10.15□□□□□ -0.78
CKS1BP61024 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC10.15□□□□□ -0.78
CKS1BP61024 PANK3-201ENST00000239231 10506 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC10.15□□□□□ -0.78
CKS1BP61024 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC10.15□□□□□ -0.78
CKS1BP61024 INTS6L-206ENST00000639893 3904 ntTSL 5 BASIC10.15□□□□□ -0.78
CKS1BP61024 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 LPP-AS2-201ENST00000605573 2852 ntBASIC10.15□□□□□ -0.78
CKS1BP61024 DAPK1-201ENST00000358077 5743 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 BTBD11-202ENST00000357167 4107 ntAPPRIS ALT2 TSL 2 BASIC10.15□□□□□ -0.78
CKS1BP61024 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC10.15□□□□□ -0.78
CKS1BP61024 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC10.15□□□□□ -0.78
CKS1BP61024 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC10.15□□□□□ -0.78
CKS1BP61024 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC10.15□□□□□ -0.78
CKS1BP61024 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC10.15□□□□□ -0.78
CKS1BP61024 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC10.15□□□□□ -0.78
CKS1BP61024 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 TPT1P11-201ENST00000458482 498 ntBASIC10.15□□□□□ -0.78
CKS1BP61024 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC10.15□□□□□ -0.78
CKS1BP61024 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC10.15□□□□□ -0.78
CKS1BP61024 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC10.15□□□□□ -0.78
CKS1BP61024 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC10.15□□□□□ -0.78
CKS1BP61024 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC10.15□□□□□ -0.78
CKS1BP61024 MIR4453-201ENST00000584019 89 ntBASIC10.15□□□□□ -0.78
CKS1BP61024 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC10.15□□□□□ -0.78
CKS1BP61024 AC004835.2-201ENST00000603762 682 ntBASIC10.15□□□□□ -0.78
CKS1BP61024 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC10.15□□□□□ -0.78
CKS1BP61024 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC10.15□□□□□ -0.78
CKS1BP61024 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC10.15□□□□□ -0.78
CKS1BP61024 PPP6C-203ENST00000451402 4349 ntTSL 2 BASIC10.15□□□□□ -0.78
CKS1BP61024 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC10.15□□□□□ -0.78
CKS1BP61024 CACNA1F-203ENST00000376265 6070 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 SLC36A1-201ENST00000243389 5781 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 SMCR8-201ENST00000406438 8279 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 SP7-201ENST00000303846 2971 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 GOLGA6L2-202ENST00000345070 1972 ntAPPRIS ALT2 TSL 5 BASIC10.15□□□□□ -0.78
CKS1BP61024 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 NCDN-201ENST00000356090 3433 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 MADD-209ENST00000406482 5614 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 GPR37L1-201ENST00000367282 6588 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
CKS1BP61024 CDC20-201ENST00000310955 1675 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
CKS1BP61024 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC10.15□□□□□ -0.79
CKS1BP61024 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC10.15□□□□□ -0.79
CKS1BP61024 PAX6-207ENST00000379129 2614 ntAPPRIS P4 TSL 5 BASIC10.15□□□□□ -0.79
CKS1BP61024 CACNA1G-204ENST00000359106 7648 ntAPPRIS P4 TSL 1 (best) BASIC10.15□□□□□ -0.79
CKS1BP61024 DNMT1-202ENST00000359526 5206 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
CKS1BP61024 FOSB-203ENST00000443841 3346 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
CKS1BP61024 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC10.15□□□□□ -0.79
CKS1BP61024 FGF11-202ENST00000572907 2358 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
CKS1BP61024 ASB7-201ENST00000332783 4985 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
CKS1BP61024 PLEKHG3-201ENST00000247226 10351 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
CKS1BP61024 BCL2L13-202ENST00000337612 4905 ntTSL 2 BASIC10.15□□□□□ -0.79
CKS1BP61024 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC10.15□□□□□ -0.79
CKS1BP61024 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC10.15□□□□□ -0.79
CKS1BP61024 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
CKS1BP61024 NXPE3-205ENST00000491511 8074 ntAPPRIS P1 TSL 2 BASIC10.14□□□□□ -0.79
CKS1BP61024 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
CKS1BP61024 IL21R-201ENST00000337929 4849 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
CKS1BP61024 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC10.14□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms