Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC12□□□□□ -0.49
HOXA1P49639 AC092580.3-201ENST00000430932 139 ntBASIC12□□□□□ -0.49
HOXA1P49639 AC241585.1-201ENST00000433527 519 ntBASIC12□□□□□ -0.49
HOXA1P49639 TRHDE-AS1-202ENST00000435350 2966 ntTSL 2 BASIC12□□□□□ -0.49
HOXA1P49639 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC12□□□□□ -0.49
HOXA1P49639 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC12□□□□□ -0.49
HOXA1P49639 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC12□□□□□ -0.49
HOXA1P49639 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC12□□□□□ -0.49
HOXA1P49639 VDAC1P7-201ENST00000462417 847 ntBASIC12□□□□□ -0.49
HOXA1P49639 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC12□□□□□ -0.49
HOXA1P49639 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC12□□□□□ -0.49
HOXA1P49639 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC12□□□□□ -0.49
HOXA1P49639 STOM-203ENST00000538954 1257 ntTSL 5 BASIC12□□□□□ -0.49
HOXA1P49639 AC135586.1-201ENST00000539323 574 ntBASIC12□□□□□ -0.49
HOXA1P49639 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
HOXA1P49639 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC12□□□□□ -0.49
HOXA1P49639 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC12□□□□□ -0.49
HOXA1P49639 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 BX539320.1-201ENST00000623759 877 ntBASIC12□□□□□ -0.49
HOXA1P49639 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 MRVI1-201ENST00000423302 6126 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
HOXA1P49639 RFX5-202ENST00000368870 2459 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
HOXA1P49639 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 CYB5RL-201ENST00000287899 5777 ntTSL 3 BASIC12□□□□□ -0.49
HOXA1P49639 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC12□□□□□ -0.49
HOXA1P49639 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC12□□□□□ -0.49
HOXA1P49639 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 MYNN-201ENST00000349841 4999 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 AC092139.4-201ENST00000624318 2794 ntBASIC12□□□□□ -0.49
HOXA1P49639 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 GAS8-201ENST00000268699 3185 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HOXA1P49639 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
HOXA1P49639 AC016397.2-201ENST00000624848 1985 ntBASIC11.99□□□□□ -0.49
HOXA1P49639 C10orf105-202ENST00000441508 4836 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 NSUN4-204ENST00000474844 2150 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 ZCCHC8-207ENST00000543897 5663 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 RAB11FIP1-202ENST00000330843 7811 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 SLC45A2-202ENST00000382102 2723 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC11.99□□□□□ -0.49
HOXA1P49639 SNED1-201ENST00000310397 8174 ntAPPRIS P2 TSL 5 BASIC11.99□□□□□ -0.49
HOXA1P49639 TLR6-202ENST00000436693 5880 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC11.99□□□□□ -0.49
HOXA1P49639 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 MIR943-201ENST00000401286 94 ntBASIC11.99□□□□□ -0.49
HOXA1P49639 MPV17-208ENST00000405076 603 ntTSL 5 BASIC11.99□□□□□ -0.49
HOXA1P49639 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC11.99□□□□□ -0.49
HOXA1P49639 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC11.99□□□□□ -0.49
HOXA1P49639 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC11.99□□□□□ -0.49
HOXA1P49639 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC11.99□□□□□ -0.49
HOXA1P49639 AC097493.3-201ENST00000509725 367 ntBASIC11.99□□□□□ -0.49
HOXA1P49639 AC026410.3-201ENST00000514280 936 ntBASIC11.99□□□□□ -0.49
HOXA1P49639 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC11.99□□□□□ -0.49
HOXA1P49639 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC11.99□□□□□ -0.49
HOXA1P49639 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
HOXA1P49639 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC11.99□□□□□ -0.49
HOXA1P49639 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC11.99□□□□□ -0.49
HOXA1P49639 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC11.99□□□□□ -0.49
HOXA1P49639 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC11.99□□□□□ -0.49
HOXA1P49639 AL590560.3-201ENST00000623350 461 ntBASIC11.99□□□□□ -0.49
HOXA1P49639 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
HOXA1P49639 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 EOGT-202ENST00000383701 4731 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC11.99□□□□□ -0.49
HOXA1P49639 ABR-202ENST00000302538 5289 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 UQCRB-201ENST00000287022 5575 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC11.99□□□□□ -0.49
HOXA1P49639 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 FAM90A26-201ENST00000512047 2492 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
HOXA1P49639 KCNIP3-202ENST00000360990 2798 ntTSL 5 BASIC11.99□□□□□ -0.49
HOXA1P49639 PDZRN3-208ENST00000479530 2778 ntTSL 2 BASIC11.99□□□□□ -0.49
HOXA1P49639 ZBED8-201ENST00000408953 2851 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
HOXA1P49639 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 SLC4A1-201ENST00000262418 4965 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 WDR73-202ENST00000434634 5387 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXA1P49639 NUMA1-234ENST00000620566 7012 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
HOXA1P49639 SEMA6D-202ENST00000354744 5931 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC11.98□□□□□ -0.49
HOXA1P49639 AC022400.8-201ENST00000623453 3599 ntBASIC11.98□□□□□ -0.49
HOXA1P49639 FAM102A-202ENST00000373084 3352 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC11.98□□□□□ -0.49
HOXA1P49639 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC11.98□□□□□ -0.49
HOXA1P49639 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC11.98□□□□□ -0.49
HOXA1P49639 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC11.98□□□□□ -0.49
HOXA1P49639 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms