Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC23.06■■□□□ 1.28
CUX1P39880 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
CUX1P39880 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CUX1P39880 CCL25-202ENST00000315626 450 ntTSL 2 BASIC23.06■■□□□ 1.28
CUX1P39880 TAC4-203ENST00000352793 564 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CUX1P39880 HLA-W-207ENST00000439514 771 ntBASIC23.06■■□□□ 1.28
CUX1P39880 AP005273.1-201ENST00000444862 522 ntTSL 3 BASIC23.06■■□□□ 1.28
CUX1P39880 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC23.06■■□□□ 1.28
CUX1P39880 AL035427.1-201ENST00000602441 387 ntTSL 3 BASIC23.06■■□□□ 1.28
CUX1P39880 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC23.06■■□□□ 1.28
CUX1P39880 FXYD4-204ENST00000616495 778 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
CUX1P39880 ZFAS1-208ENST00000618800 597 ntTSL 3 BASIC23.06■■□□□ 1.28
CUX1P39880 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC23.06■■□□□ 1.28
CUX1P39880 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
CUX1P39880 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CUX1P39880 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CUX1P39880 ZNF485-202ENST00000374435 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CUX1P39880 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC23.06■■□□□ 1.28
CUX1P39880 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
CUX1P39880 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CUX1P39880 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CUX1P39880 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
CUX1P39880 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
CUX1P39880 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC23.05■■□□□ 1.28
CUX1P39880 AC097359.2-201ENST00000604992 2389 ntBASIC23.05■■□□□ 1.28
CUX1P39880 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CUX1P39880 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC23.05■■□□□ 1.28
CUX1P39880 PPIL3-205ENST00000409449 756 ntTSL 5 BASIC23.05■■□□□ 1.28
CUX1P39880 RN7SKP212-201ENST00000410851 328 ntBASIC23.05■■□□□ 1.28
CUX1P39880 IGFL1-201ENST00000437936 769 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CUX1P39880 OR4C14P-201ENST00000440929 923 ntBASIC23.05■■□□□ 1.28
CUX1P39880 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC23.05■■□□□ 1.28
CUX1P39880 IGKV1OR-2-201ENST00000457995 350 ntBASIC23.05■■□□□ 1.28
CUX1P39880 MTHFD2P7-201ENST00000483867 983 ntBASIC23.05■■□□□ 1.28
CUX1P39880 OR52V1P-201ENST00000515557 898 ntBASIC23.05■■□□□ 1.28
CUX1P39880 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC23.05■■□□□ 1.28
CUX1P39880 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC23.05■■□□□ 1.28
CUX1P39880 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC23.05■■□□□ 1.28
CUX1P39880 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC23.05■■□□□ 1.28
CUX1P39880 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CUX1P39880 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CUX1P39880 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
CUX1P39880 IL18BP-201ENST00000260049 1354 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CUX1P39880 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
CUX1P39880 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CUX1P39880 GOSR2-209ENST00000575949 1444 ntTSL 2 BASIC23.05■■□□□ 1.28
CUX1P39880 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CUX1P39880 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CUX1P39880 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CUX1P39880 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
CUX1P39880 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC23.04■■□□□ 1.28
CUX1P39880 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC23.04■■□□□ 1.28
CUX1P39880 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
CUX1P39880 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC23.04■■□□□ 1.28
CUX1P39880 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CUX1P39880 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CUX1P39880 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
CUX1P39880 MUC1-207ENST00000368392 1032 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CUX1P39880 MUC1-208ENST00000368393 937 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CUX1P39880 RNF181-203ENST00000441634 844 ntAPPRIS ALT1 TSL 2 BASIC23.04■■□□□ 1.28
CUX1P39880 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC23.04■■□□□ 1.28
CUX1P39880 PEBP1P3-201ENST00000455475 548 ntBASIC23.04■■□□□ 1.28
CUX1P39880 MUC1-213ENST00000462215 1189 ntTSL 2 BASIC23.04■■□□□ 1.28
CUX1P39880 RNA5SP288-201ENST00000516075 93 ntBASIC23.04■■□□□ 1.28
CUX1P39880 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CUX1P39880 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC23.04■■□□□ 1.28
CUX1P39880 BX322562.1-201ENST00000617004 561 ntBASIC23.04■■□□□ 1.28
CUX1P39880 OR5L1-201ENST00000625203 1110 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
CUX1P39880 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC23.04■■□□□ 1.28
CUX1P39880 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC23.04■■□□□ 1.28
CUX1P39880 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CUX1P39880 SERHL2-201ENST00000327678 1374 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CUX1P39880 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CUX1P39880 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC23.04■■□□□ 1.28
CUX1P39880 AADACL4-201ENST00000376221 1575 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
CUX1P39880 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CUX1P39880 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
CUX1P39880 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC23.04■■□□□ 1.28
CUX1P39880 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CUX1P39880 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
CUX1P39880 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CUX1P39880 TPT1P9-201ENST00000413759 514 ntBASIC23.03■■□□□ 1.28
CUX1P39880 RN7SL173P-201ENST00000461853 292 ntBASIC23.03■■□□□ 1.28
CUX1P39880 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC23.03■■□□□ 1.28
CUX1P39880 ISL1-203ENST00000511384 981 ntTSL 5 BASIC23.03■■□□□ 1.28
CUX1P39880 IGHVII-74-1-201ENST00000517572 241 ntBASIC23.03■■□□□ 1.28
CUX1P39880 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CUX1P39880 ABCC6P1-203ENST00000565566 1170 ntBASIC23.03■■□□□ 1.28
CUX1P39880 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC23.03■■□□□ 1.28
CUX1P39880 EMP3-204ENST00000596315 761 ntTSL 2 BASIC23.03■■□□□ 1.28
CUX1P39880 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
CUX1P39880 INCA1-201ENST00000355025 1383 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
CUX1P39880 AC034205.3-201ENST00000603595 1376 ntBASIC23.03■■□□□ 1.28
CUX1P39880 AL121753.2-201ENST00000624581 1461 ntBASIC23.03■■□□□ 1.28
CUX1P39880 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC23.03■■□□□ 1.28
CUX1P39880 AC245140.2-201ENST00000624054 1939 ntBASIC23.03■■□□□ 1.28
CUX1P39880 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC23.03■■□□□ 1.28
CUX1P39880 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
CUX1P39880 HTR7P1-202ENST00000624664 4411 ntBASIC23.03■■□□□ 1.28
CUX1P39880 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms