Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DRB4X5D2U9 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC16.91■□□□□ 0.3
HLA-DRB4X5D2U9 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DRB4X5D2U9 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DRB4X5D2U9 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC16.91■□□□□ 0.3
HLA-DRB4X5D2U9 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC16.91■□□□□ 0.3
HLA-DRB4X5D2U9 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DRB4X5D2U9 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DRB4X5D2U9 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC16.91■□□□□ 0.3
HLA-DRB4X5D2U9 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DRB4X5D2U9 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DRB4X5D2U9 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
HLA-DRB4X5D2U9 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC16.9■□□□□ 0.3
HLA-DRB4X5D2U9 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DRB4X5D2U9 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
HLA-DRB4X5D2U9 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DRB4X5D2U9 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DRB4X5D2U9 EI24-204ENST00000527235 1625 ntTSL 5 BASIC16.9■□□□□ 0.3
HLA-DRB4X5D2U9 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HLA-DRB4X5D2U9 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC16.9■□□□□ 0.3
HLA-DRB4X5D2U9 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC16.9■□□□□ 0.3
HLA-DRB4X5D2U9 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DRB4X5D2U9 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DRB4X5D2U9 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DRB4X5D2U9 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC16.9■□□□□ 0.3
HLA-DRB4X5D2U9 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
HLA-DRB4X5D2U9 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
HLA-DRB4X5D2U9 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HLA-DRB4X5D2U9 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
HLA-DRB4X5D2U9 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HLA-DRB4X5D2U9 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC16.89■□□□□ 0.29
HLA-DRB4X5D2U9 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC16.89■□□□□ 0.29
HLA-DRB4X5D2U9 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
HLA-DRB4X5D2U9 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC16.89■□□□□ 0.29
HLA-DRB4X5D2U9 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HLA-DRB4X5D2U9 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC16.89■□□□□ 0.29
HLA-DRB4X5D2U9 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
HLA-DRB4X5D2U9 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HLA-DRB4X5D2U9 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HLA-DRB4X5D2U9 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DRB4X5D2U9 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DRB4X5D2U9 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DRB4X5D2U9 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DRB4X5D2U9 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DRB4X5D2U9 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC16.88■□□□□ 0.29
HLA-DRB4X5D2U9 MIR4787-201ENST00000607364 84 ntBASIC16.88■□□□□ 0.29
HLA-DRB4X5D2U9 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC16.88■□□□□ 0.29
HLA-DRB4X5D2U9 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
HLA-DRB4X5D2U9 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DRB4X5D2U9 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DRB4X5D2U9 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DRB4X5D2U9 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DRB4X5D2U9 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DRB4X5D2U9 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DRB4X5D2U9 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DRB4X5D2U9 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC16.87■□□□□ 0.29
HLA-DRB4X5D2U9 AC239859.2-201ENST00000444165 318 ntBASIC16.87■□□□□ 0.29
HLA-DRB4X5D2U9 AC092028.1-203ENST00000608262 953 ntBASIC16.87■□□□□ 0.29
HLA-DRB4X5D2U9 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC16.87■□□□□ 0.29
HLA-DRB4X5D2U9 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
HLA-DRB4X5D2U9 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
HLA-DRB4X5D2U9 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DRB4X5D2U9 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DRB4X5D2U9 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC16.87■□□□□ 0.29
HLA-DRB4X5D2U9 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DRB4X5D2U9 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DRB4X5D2U9 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC16.87■□□□□ 0.29
HLA-DRB4X5D2U9 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DRB4X5D2U9 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 CLTA-210ENST00000540080 989 ntTSL 2 BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DRB4X5D2U9 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DRB4X5D2U9 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DRB4X5D2U9 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
HLA-DRB4X5D2U9 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
HLA-DRB4X5D2U9 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DRB4X5D2U9 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DRB4X5D2U9 MIR6722-201ENST00000617286 78 ntBASIC16.85■□□□□ 0.29
HLA-DRB4X5D2U9 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC16.85■□□□□ 0.29
HLA-DRB4X5D2U9 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
HLA-DRB4X5D2U9 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DRB4X5D2U9 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DRB4X5D2U9 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms