Protein–RNA interactions for Protein: Q9Y5H9

PCDHA2, Protocadherin alpha-2, humanhuman

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA2Q9Y5H9 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
PCDHA2Q9Y5H9 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
PCDHA2Q9Y5H9 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC25.37■■□□□ 1.65
PCDHA2Q9Y5H9 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHA2Q9Y5H9 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHA2Q9Y5H9 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHA2Q9Y5H9 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHA2Q9Y5H9 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC25.37■■□□□ 1.65
PCDHA2Q9Y5H9 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC25.37■■□□□ 1.65
PCDHA2Q9Y5H9 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC25.37■■□□□ 1.65
PCDHA2Q9Y5H9 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHA2Q9Y5H9 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHA2Q9Y5H9 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHA2Q9Y5H9 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
PCDHA2Q9Y5H9 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHA2Q9Y5H9 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC25.36■■□□□ 1.65
PCDHA2Q9Y5H9 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.65
PCDHA2Q9Y5H9 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
PCDHA2Q9Y5H9 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC25.36■■□□□ 1.65
PCDHA2Q9Y5H9 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC25.36■■□□□ 1.65
PCDHA2Q9Y5H9 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC25.36■■□□□ 1.65
PCDHA2Q9Y5H9 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
PCDHA2Q9Y5H9 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
PCDHA2Q9Y5H9 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
PCDHA2Q9Y5H9 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
PCDHA2Q9Y5H9 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC25.35■■□□□ 1.65
PCDHA2Q9Y5H9 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC25.35■■□□□ 1.65
PCDHA2Q9Y5H9 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC25.35■■□□□ 1.65
PCDHA2Q9Y5H9 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
PCDHA2Q9Y5H9 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA2Q9Y5H9 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA2Q9Y5H9 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA2Q9Y5H9 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
PCDHA2Q9Y5H9 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA2Q9Y5H9 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA2Q9Y5H9 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC25.34■■□□□ 1.65
PCDHA2Q9Y5H9 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC25.34■■□□□ 1.65
PCDHA2Q9Y5H9 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA2Q9Y5H9 AC135279.3-201ENST00000610945 1311 ntBASIC25.34■■□□□ 1.65
PCDHA2Q9Y5H9 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA2Q9Y5H9 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA2Q9Y5H9 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA2Q9Y5H9 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC25.33■■□□□ 1.65
PCDHA2Q9Y5H9 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC25.33■■□□□ 1.65
PCDHA2Q9Y5H9 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC25.33■■□□□ 1.65
PCDHA2Q9Y5H9 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHA2Q9Y5H9 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
PCDHA2Q9Y5H9 DUX4L19-201ENST00000557448 1267 ntBASIC25.32■■□□□ 1.64
PCDHA2Q9Y5H9 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHA2Q9Y5H9 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC25.32■■□□□ 1.64
PCDHA2Q9Y5H9 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHA2Q9Y5H9 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC25.31■■□□□ 1.64
PCDHA2Q9Y5H9 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA2Q9Y5H9 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA2Q9Y5H9 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC25.31■■□□□ 1.64
PCDHA2Q9Y5H9 AC024257.2-201ENST00000549699 147 ntBASIC25.31■■□□□ 1.64
PCDHA2Q9Y5H9 AL031432.3-201ENST00000607698 485 ntBASIC25.31■■□□□ 1.64
PCDHA2Q9Y5H9 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC25.31■■□□□ 1.64
PCDHA2Q9Y5H9 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA2Q9Y5H9 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA2Q9Y5H9 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHA2Q9Y5H9 EI24-204ENST00000527235 1625 ntTSL 5 BASIC25.3■■□□□ 1.64
PCDHA2Q9Y5H9 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC25.3■■□□□ 1.64
PCDHA2Q9Y5H9 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC25.3■■□□□ 1.64
PCDHA2Q9Y5H9 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHA2Q9Y5H9 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHA2Q9Y5H9 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
PCDHA2Q9Y5H9 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC25.3■■□□□ 1.64
PCDHA2Q9Y5H9 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHA2Q9Y5H9 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHA2Q9Y5H9 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC25.3■■□□□ 1.64
PCDHA2Q9Y5H9 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHA2Q9Y5H9 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC25.3■■□□□ 1.64
PCDHA2Q9Y5H9 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHA2Q9Y5H9 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC25.3■■□□□ 1.64
PCDHA2Q9Y5H9 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHA2Q9Y5H9 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHA2Q9Y5H9 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
PCDHA2Q9Y5H9 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
PCDHA2Q9Y5H9 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
PCDHA2Q9Y5H9 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
PCDHA2Q9Y5H9 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHA2Q9Y5H9 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC25.29■■□□□ 1.64
PCDHA2Q9Y5H9 SUDS3P1-201ENST00000505831 966 ntBASIC25.29■■□□□ 1.64
PCDHA2Q9Y5H9 SF1-220ENST00000626028 704 ntTSL 2 BASIC25.29■■□□□ 1.64
PCDHA2Q9Y5H9 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC25.29■■□□□ 1.64
PCDHA2Q9Y5H9 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHA2Q9Y5H9 AC009102.2-201ENST00000606772 1639 ntBASIC25.29■■□□□ 1.64
PCDHA2Q9Y5H9 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC25.29■■□□□ 1.64
PCDHA2Q9Y5H9 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHA2Q9Y5H9 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHA2Q9Y5H9 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHA2Q9Y5H9 EBPL-204ENST00000378272 766 ntTSL 3 BASIC25.28■■□□□ 1.64
PCDHA2Q9Y5H9 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
PCDHA2Q9Y5H9 AC142381.2-201ENST00000566120 298 ntBASIC25.28■■□□□ 1.64
PCDHA2Q9Y5H9 AC092171.4-201ENST00000609130 632 ntBASIC25.28■■□□□ 1.64
PCDHA2Q9Y5H9 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHA2Q9Y5H9 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC25.28■■□□□ 1.64
PCDHA2Q9Y5H9 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
PCDHA2Q9Y5H9 ALDH1A3-203ENST00000557963 1670 ntBASIC25.27■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms