Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 AC027682.1-201ENST00000562846 899 ntBASIC26.15■■□□□ 1.78
CTDP1Q9Y5B0 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC26.15■■□□□ 1.78
CTDP1Q9Y5B0 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CTDP1Q9Y5B0 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CTDP1Q9Y5B0 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
CTDP1Q9Y5B0 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC26.14■■□□□ 1.78
CTDP1Q9Y5B0 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.78
CTDP1Q9Y5B0 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC26.14■■□□□ 1.78
CTDP1Q9Y5B0 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC26.14■■□□□ 1.78
CTDP1Q9Y5B0 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
CTDP1Q9Y5B0 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
CTDP1Q9Y5B0 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC26.14■■□□□ 1.77
CTDP1Q9Y5B0 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC26.14■■□□□ 1.77
CTDP1Q9Y5B0 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CTDP1Q9Y5B0 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CTDP1Q9Y5B0 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC26.13■■□□□ 1.77
CTDP1Q9Y5B0 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
CTDP1Q9Y5B0 MAG-206ENST00000597035 542 ntTSL 4 BASIC26.13■■□□□ 1.77
CTDP1Q9Y5B0 EI24-204ENST00000527235 1625 ntTSL 5 BASIC26.13■■□□□ 1.77
CTDP1Q9Y5B0 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
CTDP1Q9Y5B0 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CTDP1Q9Y5B0 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CTDP1Q9Y5B0 RASA4CP-201ENST00000424092 1398 ntBASIC26.12■■□□□ 1.77
CTDP1Q9Y5B0 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CTDP1Q9Y5B0 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC26.12■■□□□ 1.77
CTDP1Q9Y5B0 STOX2-205ENST00000513034 807 ntTSL 3 BASIC26.12■■□□□ 1.77
CTDP1Q9Y5B0 CA15P2-201ENST00000611168 834 ntBASIC26.12■■□□□ 1.77
CTDP1Q9Y5B0 VGF-203ENST00000611537 1622 ntTSL 5 BASIC26.12■■□□□ 1.77
CTDP1Q9Y5B0 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CTDP1Q9Y5B0 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC26.12■■□□□ 1.77
CTDP1Q9Y5B0 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CTDP1Q9Y5B0 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
CTDP1Q9Y5B0 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC26.11■■□□□ 1.77
CTDP1Q9Y5B0 RARRES2P6-201ENST00000567333 442 ntBASIC26.11■■□□□ 1.77
CTDP1Q9Y5B0 AC136469.2-201ENST00000623944 1028 ntBASIC26.11■■□□□ 1.77
CTDP1Q9Y5B0 AC142381.3-201ENST00000568208 1670 ntBASIC26.11■■□□□ 1.77
CTDP1Q9Y5B0 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CTDP1Q9Y5B0 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
CTDP1Q9Y5B0 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC26.1■■□□□ 1.77
CTDP1Q9Y5B0 MIR3181-201ENST00000578512 73 ntBASIC26.1■■□□□ 1.77
CTDP1Q9Y5B0 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC26.1■■□□□ 1.77
CTDP1Q9Y5B0 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CTDP1Q9Y5B0 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
CTDP1Q9Y5B0 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
CTDP1Q9Y5B0 TMEM202-AS1-202ENST00000565181 2325 ntBASIC26.09■■□□□ 1.77
CTDP1Q9Y5B0 pRNA.6-201ENST00000610482 90 ntBASIC26.09■■□□□ 1.77
CTDP1Q9Y5B0 pRNA.5-201ENST00000612139 90 ntBASIC26.09■■□□□ 1.77
CTDP1Q9Y5B0 pRNA.11-201ENST00000618423 90 ntBASIC26.09■■□□□ 1.77
CTDP1Q9Y5B0 pRNA.13-201ENST00000619112 90 ntBASIC26.09■■□□□ 1.77
CTDP1Q9Y5B0 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CTDP1Q9Y5B0 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC26.09■■□□□ 1.77
CTDP1Q9Y5B0 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
CTDP1Q9Y5B0 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
CTDP1Q9Y5B0 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC26.08■■□□□ 1.77
CTDP1Q9Y5B0 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
CTDP1Q9Y5B0 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
CTDP1Q9Y5B0 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC26.08■■□□□ 1.77
CTDP1Q9Y5B0 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
CTDP1Q9Y5B0 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
CTDP1Q9Y5B0 AC099791.1-201ENST00000416440 715 ntBASIC26.08■■□□□ 1.77
CTDP1Q9Y5B0 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC26.08■■□□□ 1.77
CTDP1Q9Y5B0 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC26.08■■□□□ 1.77
CTDP1Q9Y5B0 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.76
CTDP1Q9Y5B0 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
CTDP1Q9Y5B0 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC26.07■■□□□ 1.76
CTDP1Q9Y5B0 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
CTDP1Q9Y5B0 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CTDP1Q9Y5B0 RBM38-205ENST00000440234 686 ntTSL 2 BASIC26.07■■□□□ 1.76
CTDP1Q9Y5B0 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
CTDP1Q9Y5B0 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC26.07■■□□□ 1.76
CTDP1Q9Y5B0 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC26.07■■□□□ 1.76
CTDP1Q9Y5B0 AC138932.3-201ENST00000567634 1902 ntBASIC26.07■■□□□ 1.76
CTDP1Q9Y5B0 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CTDP1Q9Y5B0 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CTDP1Q9Y5B0 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC26.06■■□□□ 1.76
CTDP1Q9Y5B0 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
CTDP1Q9Y5B0 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
CTDP1Q9Y5B0 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC26.06■■□□□ 1.76
CTDP1Q9Y5B0 AC141586.4-201ENST00000624558 1573 ntBASIC26.06■■□□□ 1.76
CTDP1Q9Y5B0 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CTDP1Q9Y5B0 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CTDP1Q9Y5B0 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC26.05■■□□□ 1.76
CTDP1Q9Y5B0 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC26.05■■□□□ 1.76
CTDP1Q9Y5B0 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC26.05■■□□□ 1.76
CTDP1Q9Y5B0 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC26.05■■□□□ 1.76
CTDP1Q9Y5B0 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC26.05■■□□□ 1.76
CTDP1Q9Y5B0 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC26.05■■□□□ 1.76
CTDP1Q9Y5B0 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
CTDP1Q9Y5B0 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC26.05■■□□□ 1.76
CTDP1Q9Y5B0 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC26.04■■□□□ 1.76
CTDP1Q9Y5B0 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
CTDP1Q9Y5B0 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CTDP1Q9Y5B0 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
CTDP1Q9Y5B0 MED17-227ENST00000640521 2047 ntTSL 5 BASIC26.04■■□□□ 1.76
CTDP1Q9Y5B0 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC26.04■■□□□ 1.76
CTDP1Q9Y5B0 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC26.03■■□□□ 1.76
CTDP1Q9Y5B0 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CTDP1Q9Y5B0 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CTDP1Q9Y5B0 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
CTDP1Q9Y5B0 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms