Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
USE1Q9NZ43 REST-210ENST00000638187 1334 ntTSL 5 BASIC20.97■□□□□ 0.95
USE1Q9NZ43 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USE1Q9NZ43 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USE1Q9NZ43 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USE1Q9NZ43 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.96■□□□□ 0.95
USE1Q9NZ43 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
USE1Q9NZ43 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USE1Q9NZ43 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USE1Q9NZ43 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USE1Q9NZ43 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.96■□□□□ 0.95
USE1Q9NZ43 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USE1Q9NZ43 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USE1Q9NZ43 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.96■□□□□ 0.95
USE1Q9NZ43 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USE1Q9NZ43 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.96■□□□□ 0.95
USE1Q9NZ43 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
USE1Q9NZ43 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USE1Q9NZ43 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
USE1Q9NZ43 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USE1Q9NZ43 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
USE1Q9NZ43 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.95■□□□□ 0.94
USE1Q9NZ43 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USE1Q9NZ43 AC092296.2-201ENST00000589470 999 ntBASIC20.95■□□□□ 0.94
USE1Q9NZ43 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.95■□□□□ 0.94
USE1Q9NZ43 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USE1Q9NZ43 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USE1Q9NZ43 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.95■□□□□ 0.94
USE1Q9NZ43 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USE1Q9NZ43 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
USE1Q9NZ43 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USE1Q9NZ43 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
USE1Q9NZ43 AL024507.2-201ENST00000606070 2574 ntBASIC20.94■□□□□ 0.94
USE1Q9NZ43 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USE1Q9NZ43 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.94■□□□□ 0.94
USE1Q9NZ43 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
USE1Q9NZ43 PVT1-219ENST00000523427 938 ntTSL 3 BASIC20.94■□□□□ 0.94
USE1Q9NZ43 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.94■□□□□ 0.94
USE1Q9NZ43 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
USE1Q9NZ43 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USE1Q9NZ43 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USE1Q9NZ43 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
USE1Q9NZ43 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
USE1Q9NZ43 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
USE1Q9NZ43 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
USE1Q9NZ43 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
USE1Q9NZ43 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
USE1Q9NZ43 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USE1Q9NZ43 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USE1Q9NZ43 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USE1Q9NZ43 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USE1Q9NZ43 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
USE1Q9NZ43 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USE1Q9NZ43 AC093536.1-201ENST00000569153 554 ntBASIC20.93■□□□□ 0.94
USE1Q9NZ43 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.93■□□□□ 0.94
USE1Q9NZ43 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USE1Q9NZ43 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.93■□□□□ 0.94
USE1Q9NZ43 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.93■□□□□ 0.94
USE1Q9NZ43 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.93■□□□□ 0.94
USE1Q9NZ43 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.93■□□□□ 0.94
USE1Q9NZ43 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.93■□□□□ 0.94
USE1Q9NZ43 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
USE1Q9NZ43 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC20.92■□□□□ 0.94
USE1Q9NZ43 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
USE1Q9NZ43 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USE1Q9NZ43 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.92■□□□□ 0.94
USE1Q9NZ43 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USE1Q9NZ43 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.92■□□□□ 0.94
USE1Q9NZ43 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USE1Q9NZ43 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USE1Q9NZ43 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USE1Q9NZ43 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USE1Q9NZ43 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USE1Q9NZ43 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
USE1Q9NZ43 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.91■□□□□ 0.94
USE1Q9NZ43 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.91■□□□□ 0.94
USE1Q9NZ43 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
USE1Q9NZ43 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USE1Q9NZ43 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.9■□□□□ 0.94
USE1Q9NZ43 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.9■□□□□ 0.94
USE1Q9NZ43 MIR3648-2-201ENST00000581792 180 ntBASIC20.9■□□□□ 0.94
USE1Q9NZ43 MIR3648-1-201ENST00000615959 180 ntBASIC20.9■□□□□ 0.94
USE1Q9NZ43 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.9■□□□□ 0.94
USE1Q9NZ43 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.9■□□□□ 0.94
USE1Q9NZ43 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
USE1Q9NZ43 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
USE1Q9NZ43 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
USE1Q9NZ43 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
USE1Q9NZ43 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USE1Q9NZ43 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USE1Q9NZ43 AC090877.2-201ENST00000558441 1738 ntBASIC20.89■□□□□ 0.93
USE1Q9NZ43 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USE1Q9NZ43 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.89■□□□□ 0.93
USE1Q9NZ43 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USE1Q9NZ43 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USE1Q9NZ43 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
USE1Q9NZ43 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
USE1Q9NZ43 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USE1Q9NZ43 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USE1Q9NZ43 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms