Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC30.68■■■□□ 2.5
ABCA3Q99758 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
ABCA3Q99758 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC30.67■■■□□ 2.5
ABCA3Q99758 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
ABCA3Q99758 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC30.67■■■□□ 2.5
ABCA3Q99758 AC073111.5-205ENST00000641717 521 ntBASIC30.67■■■□□ 2.5
ABCA3Q99758 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC30.67■■■□□ 2.5
ABCA3Q99758 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC30.67■■■□□ 2.5
ABCA3Q99758 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
ABCA3Q99758 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
ABCA3Q99758 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC30.67■■■□□ 2.5
ABCA3Q99758 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
ABCA3Q99758 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC30.67■■■□□ 2.5
ABCA3Q99758 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC30.67■■■□□ 2.5
ABCA3Q99758 PKM-203ENST00000389093 2279 ntTSL 5 BASIC30.67■■■□□ 2.5
ABCA3Q99758 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
ABCA3Q99758 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
ABCA3Q99758 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC30.66■■■□□ 2.5
ABCA3Q99758 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC30.66■■■□□ 2.5
ABCA3Q99758 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC30.66■■■□□ 2.5
ABCA3Q99758 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
ABCA3Q99758 NT5C3AP1-201ENST00000394500 1012 ntBASIC30.65■■■□□ 2.5
ABCA3Q99758 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC30.65■■■□□ 2.5
ABCA3Q99758 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
ABCA3Q99758 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
ABCA3Q99758 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC30.65■■■□□ 2.5
ABCA3Q99758 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC30.65■■■□□ 2.5
ABCA3Q99758 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
ABCA3Q99758 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC30.65■■■□□ 2.5
ABCA3Q99758 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC30.64■■■□□ 2.5
ABCA3Q99758 AC006015.1-201ENST00000429970 570 ntBASIC30.64■■■□□ 2.5
ABCA3Q99758 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
ABCA3Q99758 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC30.64■■■□□ 2.5
ABCA3Q99758 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
ABCA3Q99758 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
ABCA3Q99758 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC30.64■■■□□ 2.5
ABCA3Q99758 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC30.64■■■□□ 2.5
ABCA3Q99758 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC30.64■■■□□ 2.49
ABCA3Q99758 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC30.64■■■□□ 2.49
ABCA3Q99758 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC30.64■■■□□ 2.49
ABCA3Q99758 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
ABCA3Q99758 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC30.63■■■□□ 2.49
ABCA3Q99758 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC30.63■■■□□ 2.49
ABCA3Q99758 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC30.63■■■□□ 2.49
ABCA3Q99758 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC30.62■■■□□ 2.49
ABCA3Q99758 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC30.62■■■□□ 2.49
ABCA3Q99758 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
ABCA3Q99758 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
ABCA3Q99758 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC30.62■■■□□ 2.49
ABCA3Q99758 OR2I1P-207ENST00000453522 948 ntBASIC30.62■■■□□ 2.49
ABCA3Q99758 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC30.62■■■□□ 2.49
ABCA3Q99758 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC30.62■■■□□ 2.49
ABCA3Q99758 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
ABCA3Q99758 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
ABCA3Q99758 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC30.61■■■□□ 2.49
ABCA3Q99758 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
ABCA3Q99758 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC30.61■■■□□ 2.49
ABCA3Q99758 AC104771.1-201ENST00000603335 964 ntBASIC30.61■■■□□ 2.49
ABCA3Q99758 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
ABCA3Q99758 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC30.61■■■□□ 2.49
ABCA3Q99758 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
ABCA3Q99758 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
ABCA3Q99758 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
ABCA3Q99758 NTF6G-201ENST00000591094 616 ntBASIC30.61■■■□□ 2.49
ABCA3Q99758 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
ABCA3Q99758 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC30.6■■■□□ 2.49
ABCA3Q99758 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
ABCA3Q99758 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
ABCA3Q99758 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
ABCA3Q99758 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
ABCA3Q99758 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
ABCA3Q99758 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
ABCA3Q99758 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
ABCA3Q99758 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
ABCA3Q99758 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC30.59■■■□□ 2.49
ABCA3Q99758 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
ABCA3Q99758 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC30.59■■■□□ 2.49
ABCA3Q99758 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
ABCA3Q99758 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC30.59■■■□□ 2.49
ABCA3Q99758 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
ABCA3Q99758 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
ABCA3Q99758 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC30.59■■■□□ 2.49
ABCA3Q99758 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
ABCA3Q99758 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
ABCA3Q99758 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
ABCA3Q99758 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
ABCA3Q99758 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
ABCA3Q99758 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC30.59■■■□□ 2.49
ABCA3Q99758 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC30.59■■■□□ 2.49
ABCA3Q99758 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC30.58■■■□□ 2.49
ABCA3Q99758 SLC6A10P-202ENST00000431994 2058 ntBASIC30.58■■■□□ 2.49
ABCA3Q99758 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC30.58■■■□□ 2.49
ABCA3Q99758 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC30.58■■■□□ 2.49
ABCA3Q99758 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
ABCA3Q99758 AC092803.2-201ENST00000564287 1899 ntBASIC30.57■■■□□ 2.48
ABCA3Q99758 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
ABCA3Q99758 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
ABCA3Q99758 TPRG1LP1-201ENST00000598702 760 ntBASIC30.57■■■□□ 2.48
ABCA3Q99758 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC30.57■■■□□ 2.48
ABCA3Q99758 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC30.57■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms