Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
TTC28Q96AY4 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC23.49■■□□□ 1.35
TTC28Q96AY4 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC23.49■■□□□ 1.35
TTC28Q96AY4 TFG-210ENST00000620299 1289 ntTSL 5 BASIC23.49■■□□□ 1.35
TTC28Q96AY4 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC23.48■■□□□ 1.35
TTC28Q96AY4 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
TTC28Q96AY4 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
TTC28Q96AY4 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
TTC28Q96AY4 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
TTC28Q96AY4 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
TTC28Q96AY4 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
TTC28Q96AY4 SLC7A5P2-201ENST00000553010 536 ntBASIC23.48■■□□□ 1.35
TTC28Q96AY4 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
TTC28Q96AY4 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
TTC28Q96AY4 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC23.48■■□□□ 1.35
TTC28Q96AY4 SLC29A4P1-201ENST00000398760 971 ntBASIC23.48■■□□□ 1.35
TTC28Q96AY4 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
TTC28Q96AY4 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
TTC28Q96AY4 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC23.47■■□□□ 1.35
TTC28Q96AY4 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC23.47■■□□□ 1.35
TTC28Q96AY4 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC23.47■■□□□ 1.35
TTC28Q96AY4 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC23.47■■□□□ 1.35
TTC28Q96AY4 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC23.47■■□□□ 1.35
TTC28Q96AY4 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
TTC28Q96AY4 KRT19P1-201ENST00000405746 1186 ntBASIC23.47■■□□□ 1.35
TTC28Q96AY4 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
TTC28Q96AY4 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC23.46■■□□□ 1.35
TTC28Q96AY4 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC23.46■■□□□ 1.35
TTC28Q96AY4 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC23.46■■□□□ 1.35
TTC28Q96AY4 FAM210CP-201ENST00000445714 574 ntBASIC23.46■■□□□ 1.35
TTC28Q96AY4 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
TTC28Q96AY4 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
TTC28Q96AY4 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC23.46■■□□□ 1.35
TTC28Q96AY4 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC23.45■■□□□ 1.35
TTC28Q96AY4 CASP6-205ENST00000505486 538 ntTSL 4 BASIC23.45■■□□□ 1.35
TTC28Q96AY4 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.34
TTC28Q96AY4 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC23.45■■□□□ 1.34
TTC28Q96AY4 MAZ-216ENST00000616501 991 ntTSL 5 BASIC23.45■■□□□ 1.34
TTC28Q96AY4 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.34
TTC28Q96AY4 OAS3-207ENST00000551007 998 ntTSL 2 BASIC23.44■■□□□ 1.34
TTC28Q96AY4 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC23.44■■□□□ 1.34
TTC28Q96AY4 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC23.44■■□□□ 1.34
TTC28Q96AY4 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC23.44■■□□□ 1.34
TTC28Q96AY4 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
TTC28Q96AY4 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC23.44■■□□□ 1.34
TTC28Q96AY4 AC009086.3-201ENST00000623486 1008 ntBASIC23.44■■□□□ 1.34
TTC28Q96AY4 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
TTC28Q96AY4 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
TTC28Q96AY4 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC23.43■■□□□ 1.34
TTC28Q96AY4 RGMA-211ENST00000557420 989 ntTSL 3 BASIC23.43■■□□□ 1.34
TTC28Q96AY4 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC23.43■■□□□ 1.34
TTC28Q96AY4 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
TTC28Q96AY4 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
TTC28Q96AY4 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
TTC28Q96AY4 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
TTC28Q96AY4 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
TTC28Q96AY4 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC23.43■■□□□ 1.34
TTC28Q96AY4 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC23.43■■□□□ 1.34
TTC28Q96AY4 MAX-217ENST00000557277 728 ntTSL 3 BASIC23.43■■□□□ 1.34
TTC28Q96AY4 AC011767.1-201ENST00000617410 1153 ntBASIC23.43■■□□□ 1.34
TTC28Q96AY4 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.43■■□□□ 1.34
TTC28Q96AY4 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
TTC28Q96AY4 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
TTC28Q96AY4 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
TTC28Q96AY4 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
TTC28Q96AY4 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC23.42■■□□□ 1.34
TTC28Q96AY4 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
TTC28Q96AY4 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC23.42■■□□□ 1.34
TTC28Q96AY4 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
TTC28Q96AY4 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
TTC28Q96AY4 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
TTC28Q96AY4 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
TTC28Q96AY4 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC23.41■■□□□ 1.34
TTC28Q96AY4 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
TTC28Q96AY4 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
TTC28Q96AY4 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC23.4■■□□□ 1.34
TTC28Q96AY4 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
TTC28Q96AY4 pRNA.6-201ENST00000610482 90 ntBASIC23.4■■□□□ 1.34
TTC28Q96AY4 pRNA.5-201ENST00000612139 90 ntBASIC23.4■■□□□ 1.34
TTC28Q96AY4 pRNA.11-201ENST00000618423 90 ntBASIC23.4■■□□□ 1.34
TTC28Q96AY4 pRNA.13-201ENST00000619112 90 ntBASIC23.4■■□□□ 1.34
TTC28Q96AY4 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
TTC28Q96AY4 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
TTC28Q96AY4 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.4■■□□□ 1.34
TTC28Q96AY4 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
TTC28Q96AY4 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC23.39■■□□□ 1.34
TTC28Q96AY4 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC23.39■■□□□ 1.34
TTC28Q96AY4 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC23.39■■□□□ 1.34
TTC28Q96AY4 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC23.39■■□□□ 1.34
TTC28Q96AY4 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.34
TTC28Q96AY4 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.34
TTC28Q96AY4 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.33
TTC28Q96AY4 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC23.39■■□□□ 1.33
TTC28Q96AY4 AP006294.2-201ENST00000641667 209 ntBASIC23.39■■□□□ 1.33
TTC28Q96AY4 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
TTC28Q96AY4 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
TTC28Q96AY4 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
TTC28Q96AY4 LHPP-203ENST00000392757 840 ntTSL 3 BASIC23.38■■□□□ 1.33
TTC28Q96AY4 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC23.38■■□□□ 1.33
TTC28Q96AY4 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC23.38■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 132.6 ms