Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
SYNE1Q8NF91 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC6.89□□□□□ -1.31
SYNE1Q8NF91 HLA-L-211ENST00000482052 1765 ntBASIC6.89□□□□□ -1.31
SYNE1Q8NF91 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SYNE1Q8NF91 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC6.89□□□□□ -1.31
SYNE1Q8NF91 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SYNE1Q8NF91 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SYNE1Q8NF91 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SYNE1Q8NF91 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC6.89□□□□□ -1.31
SYNE1Q8NF91 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC6.89□□□□□ -1.31
SYNE1Q8NF91 AC099791.2-201ENST00000605725 427 ntBASIC6.89□□□□□ -1.31
SYNE1Q8NF91 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
SYNE1Q8NF91 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC6.89□□□□□ -1.31
SYNE1Q8NF91 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SYNE1Q8NF91 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
SYNE1Q8NF91 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC6.89□□□□□ -1.31
SYNE1Q8NF91 SSSCA1-AS1-201ENST00000567594 614 ntBASIC6.89□□□□□ -1.31
SYNE1Q8NF91 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC6.89□□□□□ -1.31
SYNE1Q8NF91 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
SYNE1Q8NF91 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
SYNE1Q8NF91 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
SYNE1Q8NF91 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SYNE1Q8NF91 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 EDA-201ENST00000338901 1233 ntBASIC6.88□□□□□ -1.31
SYNE1Q8NF91 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 PARL-206ENST00000435888 1098 ntTSL 5 BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 DUX4L19-201ENST00000557448 1267 ntBASIC6.88□□□□□ -1.31
SYNE1Q8NF91 pRNA.6-201ENST00000610482 90 ntBASIC6.88□□□□□ -1.31
SYNE1Q8NF91 pRNA.5-201ENST00000612139 90 ntBASIC6.88□□□□□ -1.31
SYNE1Q8NF91 pRNA.11-201ENST00000618423 90 ntBASIC6.88□□□□□ -1.31
SYNE1Q8NF91 pRNA.13-201ENST00000619112 90 ntBASIC6.88□□□□□ -1.31
SYNE1Q8NF91 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 DUX4L2-201ENST00000561772 1275 ntBASIC6.88□□□□□ -1.31
SYNE1Q8NF91 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 DUX4L6-201ENST00000626483 1275 ntBASIC6.88□□□□□ -1.31
SYNE1Q8NF91 DUX4L1-201ENST00000627662 1275 ntBASIC6.88□□□□□ -1.31
SYNE1Q8NF91 DUX4L8-201ENST00000629013 1275 ntBASIC6.88□□□□□ -1.31
SYNE1Q8NF91 DUX4L3-201ENST00000630187 1275 ntBASIC6.88□□□□□ -1.31
SYNE1Q8NF91 DUX4L7-201ENST00000630678 1275 ntBASIC6.88□□□□□ -1.31
SYNE1Q8NF91 DUX4L5-201ENST00000630834 1275 ntBASIC6.88□□□□□ -1.31
SYNE1Q8NF91 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
SYNE1Q8NF91 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC6.87□□□□□ -1.31
SYNE1Q8NF91 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC6.87□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms