Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC012414.1-201ENST00000556676 535 ntBASIC30.6■■■□□ 2.49
USP54Q70EL1 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC30.6■■■□□ 2.49
USP54Q70EL1 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC30.6■■■□□ 2.49
USP54Q70EL1 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC30.6■■■□□ 2.49
USP54Q70EL1 AK1-201ENST00000223836 736 ntTSL 3 BASIC30.59■■■□□ 2.49
USP54Q70EL1 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC30.59■■■□□ 2.49
USP54Q70EL1 pRNA.6-201ENST00000610482 90 ntBASIC30.59■■■□□ 2.49
USP54Q70EL1 pRNA.5-201ENST00000612139 90 ntBASIC30.59■■■□□ 2.49
USP54Q70EL1 SP2-202ENST00000613139 908 ntTSL 5 BASIC30.59■■■□□ 2.49
USP54Q70EL1 pRNA.11-201ENST00000618423 90 ntBASIC30.59■■■□□ 2.49
USP54Q70EL1 pRNA.13-201ENST00000619112 90 ntBASIC30.59■■■□□ 2.49
USP54Q70EL1 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC30.59■■■□□ 2.49
USP54Q70EL1 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
USP54Q70EL1 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC30.58■■■□□ 2.49
USP54Q70EL1 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC30.58■■■□□ 2.49
USP54Q70EL1 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
USP54Q70EL1 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC30.58■■■□□ 2.49
USP54Q70EL1 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
USP54Q70EL1 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
USP54Q70EL1 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
USP54Q70EL1 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC30.58■■■□□ 2.49
USP54Q70EL1 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
USP54Q70EL1 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
USP54Q70EL1 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC30.57■■■□□ 2.48
USP54Q70EL1 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
USP54Q70EL1 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC30.57■■■□□ 2.48
USP54Q70EL1 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC30.57■■■□□ 2.48
USP54Q70EL1 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC30.57■■■□□ 2.48
USP54Q70EL1 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
USP54Q70EL1 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
USP54Q70EL1 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC30.57■■■□□ 2.48
USP54Q70EL1 OR2I1P-207ENST00000453522 948 ntBASIC30.57■■■□□ 2.48
USP54Q70EL1 AICDA-202ENST00000537228 667 ntTSL 5 BASIC30.57■■■□□ 2.48
USP54Q70EL1 AL499627.2-201ENST00000606283 725 ntBASIC30.57■■■□□ 2.48
USP54Q70EL1 AP003733.4-201ENST00000623785 1697 ntBASIC30.56■■■□□ 2.48
USP54Q70EL1 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP54Q70EL1 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP54Q70EL1 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP54Q70EL1 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC30.56■■■□□ 2.48
USP54Q70EL1 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
USP54Q70EL1 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP54Q70EL1 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
USP54Q70EL1 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
USP54Q70EL1 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC30.56■■■□□ 2.48
USP54Q70EL1 KRT18P5-201ENST00000436075 1291 ntBASIC30.55■■■□□ 2.48
USP54Q70EL1 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
USP54Q70EL1 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC30.55■■■□□ 2.48
USP54Q70EL1 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC30.55■■■□□ 2.48
USP54Q70EL1 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
USP54Q70EL1 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC30.55■■■□□ 2.48
USP54Q70EL1 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
USP54Q70EL1 AC034268.1-201ENST00000441047 882 ntBASIC30.55■■■□□ 2.48
USP54Q70EL1 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC30.55■■■□□ 2.48
USP54Q70EL1 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC30.54■■■□□ 2.48
USP54Q70EL1 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
USP54Q70EL1 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
USP54Q70EL1 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
USP54Q70EL1 GRAMD4P2-201ENST00000423297 1097 ntBASIC30.54■■■□□ 2.48
USP54Q70EL1 YBX1P1-201ENST00000445822 960 ntBASIC30.54■■■□□ 2.48
USP54Q70EL1 TSPY26P-201ENST00000476365 1326 ntBASIC30.54■■■□□ 2.48
USP54Q70EL1 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
USP54Q70EL1 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC30.53■■■□□ 2.48
USP54Q70EL1 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC30.53■■■□□ 2.48
USP54Q70EL1 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC30.53■■■□□ 2.48
USP54Q70EL1 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
USP54Q70EL1 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
USP54Q70EL1 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
USP54Q70EL1 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC30.52■■■□□ 2.48
USP54Q70EL1 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
USP54Q70EL1 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
USP54Q70EL1 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
USP54Q70EL1 DUX4L2-201ENST00000561772 1275 ntBASIC30.52■■■□□ 2.48
USP54Q70EL1 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC30.52■■■□□ 2.48
USP54Q70EL1 DUX4L6-201ENST00000626483 1275 ntBASIC30.52■■■□□ 2.48
USP54Q70EL1 DUX4L1-201ENST00000627662 1275 ntBASIC30.52■■■□□ 2.48
USP54Q70EL1 DUX4L8-201ENST00000629013 1275 ntBASIC30.52■■■□□ 2.48
USP54Q70EL1 DUX4L3-201ENST00000630187 1275 ntBASIC30.52■■■□□ 2.48
USP54Q70EL1 DUX4L7-201ENST00000630678 1275 ntBASIC30.52■■■□□ 2.48
USP54Q70EL1 DUX4L5-201ENST00000630834 1275 ntBASIC30.52■■■□□ 2.48
USP54Q70EL1 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
USP54Q70EL1 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
USP54Q70EL1 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC30.51■■■□□ 2.47
USP54Q70EL1 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC30.51■■■□□ 2.47
USP54Q70EL1 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC30.51■■■□□ 2.47
USP54Q70EL1 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC30.51■■■□□ 2.47
USP54Q70EL1 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC30.5■■■□□ 2.47
USP54Q70EL1 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC30.5■■■□□ 2.47
USP54Q70EL1 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
USP54Q70EL1 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
USP54Q70EL1 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
USP54Q70EL1 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
USP54Q70EL1 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC30.49■■■□□ 2.47
USP54Q70EL1 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
USP54Q70EL1 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.47
USP54Q70EL1 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
USP54Q70EL1 AC010525.1-201ENST00000585559 441 ntBASIC30.49■■■□□ 2.47
USP54Q70EL1 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC30.49■■■□□ 2.47
USP54Q70EL1 AC022211.4-201ENST00000625094 2161 ntBASIC30.48■■■□□ 2.47
USP54Q70EL1 AC126544.1-201ENST00000580842 1059 ntBASIC30.48■■■□□ 2.47
USP54Q70EL1 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC30.48■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms