Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC58Q4VC31 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC58Q4VC31 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC58Q4VC31 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC58Q4VC31 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC58Q4VC31 AC009831.1-201ENST00000580420 1582 ntBASIC20.05■□□□□ 0.8
CCDC58Q4VC31 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC58Q4VC31 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC58Q4VC31 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC58Q4VC31 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC58Q4VC31 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC58Q4VC31 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC58Q4VC31 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC58Q4VC31 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CCDC58Q4VC31 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC58Q4VC31 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC58Q4VC31 AL022069.1-201ENST00000568025 1636 ntBASIC20.05■□□□□ 0.8
CCDC58Q4VC31 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC58Q4VC31 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC58Q4VC31 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC58Q4VC31 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC58Q4VC31 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC58Q4VC31 EP400NL-214ENST00000641289 2402 ntBASIC20.04■□□□□ 0.8
CCDC58Q4VC31 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
CCDC58Q4VC31 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC58Q4VC31 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC58Q4VC31 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC58Q4VC31 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC58Q4VC31 RPS2-202ENST00000526522 924 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC58Q4VC31 AC133552.2-201ENST00000619106 1032 ntBASIC20.04■□□□□ 0.8
CCDC58Q4VC31 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CCDC58Q4VC31 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CCDC58Q4VC31 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC58Q4VC31 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC58Q4VC31 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC58Q4VC31 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CCDC58Q4VC31 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CCDC58Q4VC31 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC58Q4VC31 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC58Q4VC31 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC58Q4VC31 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.03■□□□□ 0.8
CCDC58Q4VC31 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC58Q4VC31 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC58Q4VC31 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CCDC58Q4VC31 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
CCDC58Q4VC31 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC58Q4VC31 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC58Q4VC31 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC58Q4VC31 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC58Q4VC31 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CCDC58Q4VC31 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC58Q4VC31 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC58Q4VC31 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CCDC58Q4VC31 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
CCDC58Q4VC31 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.79
CCDC58Q4VC31 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
CCDC58Q4VC31 GUSBP5-202ENST00000510805 1989 ntBASIC20.01■□□□□ 0.79
CCDC58Q4VC31 LINC00526-201ENST00000581067 1875 ntBASIC20.01■□□□□ 0.79
CCDC58Q4VC31 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC58Q4VC31 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CCDC58Q4VC31 GPX1-201ENST00000419349 1106 ntBASIC20.01■□□□□ 0.79
CCDC58Q4VC31 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC58Q4VC31 AC018755.3-202ENST00000596210 929 ntBASIC20.01■□□□□ 0.79
CCDC58Q4VC31 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC58Q4VC31 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC58Q4VC31 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC58Q4VC31 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC58Q4VC31 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC58Q4VC31 AC127496.7-201ENST00000625110 1798 ntBASIC20■□□□□ 0.79
CCDC58Q4VC31 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC58Q4VC31 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC58Q4VC31 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC58Q4VC31 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC58Q4VC31 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC58Q4VC31 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC58Q4VC31 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
CCDC58Q4VC31 AC087393.1-201ENST00000582896 145 ntBASIC20■□□□□ 0.79
CCDC58Q4VC31 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms