Protein–RNA interactions for Protein: P49761

CLK3, Dual specificity protein kinase CLK3, humanhuman

Known RBP Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3P49761 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLK3P49761 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CLK3P49761 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLK3P49761 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLK3P49761 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.25■□□□□ 0.99
CLK3P49761 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
CLK3P49761 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.25■□□□□ 0.99
CLK3P49761 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLK3P49761 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CLK3P49761 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLK3P49761 EP400NL-214ENST00000641289 2402 ntBASIC21.25■□□□□ 0.99
CLK3P49761 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
CLK3P49761 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.24■□□□□ 0.99
CLK3P49761 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.24■□□□□ 0.99
CLK3P49761 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.24■□□□□ 0.99
CLK3P49761 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.24■□□□□ 0.99
CLK3P49761 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.24■□□□□ 0.99
CLK3P49761 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CLK3P49761 AC137630.3-201ENST00000607245 391 ntBASIC21.24■□□□□ 0.99
CLK3P49761 AC233723.2-201ENST00000623798 2106 ntBASIC21.24■□□□□ 0.99
CLK3P49761 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
CLK3P49761 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CLK3P49761 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
CLK3P49761 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
CLK3P49761 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLK3P49761 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLK3P49761 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CLK3P49761 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLK3P49761 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CLK3P49761 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLK3P49761 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLK3P49761 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.23■□□□□ 0.99
CLK3P49761 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLK3P49761 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.23■□□□□ 0.99
CLK3P49761 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.23■□□□□ 0.99
CLK3P49761 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
CLK3P49761 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLK3P49761 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
CLK3P49761 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.22■□□□□ 0.99
CLK3P49761 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLK3P49761 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CLK3P49761 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CLK3P49761 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLK3P49761 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
CLK3P49761 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLK3P49761 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLK3P49761 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.22■□□□□ 0.99
CLK3P49761 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.22■□□□□ 0.99
CLK3P49761 KRT125P-201ENST00000546827 989 ntBASIC21.22■□□□□ 0.99
CLK3P49761 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CLK3P49761 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
CLK3P49761 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CLK3P49761 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLK3P49761 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
CLK3P49761 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
CLK3P49761 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLK3P49761 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CLK3P49761 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.21■□□□□ 0.99
CLK3P49761 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLK3P49761 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.21■□□□□ 0.99
CLK3P49761 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CLK3P49761 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLK3P49761 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.21■□□□□ 0.99
CLK3P49761 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CLK3P49761 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.21■□□□□ 0.99
CLK3P49761 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CLK3P49761 Z92544.1-202ENST00000571933 1220 ntBASIC21.21■□□□□ 0.99
CLK3P49761 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLK3P49761 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLK3P49761 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CLK3P49761 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CLK3P49761 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
CLK3P49761 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CLK3P49761 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CLK3P49761 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLK3P49761 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
CLK3P49761 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.2■□□□□ 0.98
CLK3P49761 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.2■□□□□ 0.98
CLK3P49761 AL451085.2-201ENST00000605085 799 ntBASIC21.2■□□□□ 0.98
CLK3P49761 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLK3P49761 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLK3P49761 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLK3P49761 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLK3P49761 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
CLK3P49761 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CLK3P49761 AL161729.1-201ENST00000604104 1402 ntBASIC21.2■□□□□ 0.98
CLK3P49761 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.2■□□□□ 0.98
CLK3P49761 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLK3P49761 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLK3P49761 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.2■□□□□ 0.98
CLK3P49761 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLK3P49761 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.2■□□□□ 0.98
CLK3P49761 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLK3P49761 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CLK3P49761 AL022069.1-201ENST00000568025 1636 ntBASIC21.19■□□□□ 0.98
CLK3P49761 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLK3P49761 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.19■□□□□ 0.98
CLK3P49761 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CLK3P49761 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.19■□□□□ 0.98
CLK3P49761 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms