Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HLA-DQA1P01909 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HLA-DQA1P01909 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HLA-DQA1P01909 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HLA-DQA1P01909 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HLA-DQA1P01909 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HLA-DQA1P01909 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HLA-DQA1P01909 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
HLA-DQA1P01909 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
HLA-DQA1P01909 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DQA1P01909 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DQA1P01909 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC16.95■□□□□ 0.3
HLA-DQA1P01909 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC16.95■□□□□ 0.3
HLA-DQA1P01909 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC16.95■□□□□ 0.3
HLA-DQA1P01909 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
HLA-DQA1P01909 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DQA1P01909 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC16.95■□□□□ 0.3
HLA-DQA1P01909 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DQA1P01909 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
HLA-DQA1P01909 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC16.95■□□□□ 0.3
HLA-DQA1P01909 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC16.95■□□□□ 0.3
HLA-DQA1P01909 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HLA-DQA1P01909 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DQA1P01909 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DQA1P01909 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
HLA-DQA1P01909 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DQA1P01909 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DQA1P01909 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DQA1P01909 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC16.94■□□□□ 0.3
HLA-DQA1P01909 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC16.94■□□□□ 0.3
HLA-DQA1P01909 LINC01971-201ENST00000617888 1048 ntBASIC16.94■□□□□ 0.3
HLA-DQA1P01909 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
HLA-DQA1P01909 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DQA1P01909 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC16.94■□□□□ 0.3
HLA-DQA1P01909 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HLA-DQA1P01909 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
HLA-DQA1P01909 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
HLA-DQA1P01909 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
HLA-DQA1P01909 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DQA1P01909 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DQA1P01909 ZNRF2P2-203ENST00000454624 420 ntBASIC16.93■□□□□ 0.3
HLA-DQA1P01909 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC16.93■□□□□ 0.3
HLA-DQA1P01909 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DQA1P01909 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DQA1P01909 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DQA1P01909 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC16.93■□□□□ 0.3
HLA-DQA1P01909 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DQA1P01909 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC16.93■□□□□ 0.3
HLA-DQA1P01909 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DQA1P01909 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC16.92■□□□□ 0.3
HLA-DQA1P01909 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
HLA-DQA1P01909 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DQA1P01909 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
HLA-DQA1P01909 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC16.92■□□□□ 0.3
HLA-DQA1P01909 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DQA1P01909 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DQA1P01909 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DQA1P01909 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DQA1P01909 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DQA1P01909 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
HLA-DQA1P01909 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DQA1P01909 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DQA1P01909 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
HLA-DQA1P01909 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DQA1P01909 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DQA1P01909 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
HLA-DQA1P01909 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DQA1P01909 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DQA1P01909 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
HLA-DQA1P01909 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC16.91■□□□□ 0.3
HLA-DQA1P01909 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DQA1P01909 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DQA1P01909 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DQA1P01909 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DQA1P01909 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DQA1P01909 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DQA1P01909 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HLA-DQA1P01909 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DQA1P01909 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DQA1P01909 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DQA1P01909 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HLA-DQA1P01909 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DQA1P01909 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DQA1P01909 ABHD17AP4-201ENST00000411545 909 ntBASIC16.9■□□□□ 0.3
HLA-DQA1P01909 C11orf96-202ENST00000528572 1834 ntBASIC16.9■□□□□ 0.3
HLA-DQA1P01909 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC16.9■□□□□ 0.3
HLA-DQA1P01909 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HLA-DQA1P01909 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DQA1P01909 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC16.9■□□□□ 0.3
HLA-DQA1P01909 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
HLA-DQA1P01909 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DQA1P01909 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DQA1P01909 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC16.9■□□□□ 0.3
HLA-DQA1P01909 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
HLA-DQA1P01909 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DQA1P01909 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
HLA-DQA1P01909 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC16.89■□□□□ 0.29
HLA-DQA1P01909 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HLA-DQA1P01909 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HLA-DQA1P01909 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms