Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC34.55■■■■□ 3.12
RAPGEF3O95398 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC34.55■■■■□ 3.12
RAPGEF3O95398 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC34.55■■■■□ 3.12
RAPGEF3O95398 ST7-202ENST00000323984 2142 ntTSL 5 BASIC34.55■■■■□ 3.12
RAPGEF3O95398 ST7-207ENST00000393449 2127 ntTSL 5 BASIC34.55■■■■□ 3.12
RAPGEF3O95398 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC34.55■■■■□ 3.12
RAPGEF3O95398 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC34.54■■■■□ 3.12
RAPGEF3O95398 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC34.54■■■■□ 3.12
RAPGEF3O95398 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
RAPGEF3O95398 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
RAPGEF3O95398 AL355802.2-201ENST00000402069 882 ntBASIC34.53■■■■□ 3.12
RAPGEF3O95398 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC34.53■■■■□ 3.12
RAPGEF3O95398 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC34.53■■■■□ 3.12
RAPGEF3O95398 AL022069.1-201ENST00000568025 1636 ntBASIC34.52■■■■□ 3.12
RAPGEF3O95398 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
RAPGEF3O95398 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC34.52■■■■□ 3.12
RAPGEF3O95398 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC34.52■■■■□ 3.12
RAPGEF3O95398 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC34.52■■■■□ 3.12
RAPGEF3O95398 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
RAPGEF3O95398 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC34.52■■■■□ 3.12
RAPGEF3O95398 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC34.51■■■■□ 3.12
RAPGEF3O95398 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC34.51■■■■□ 3.12
RAPGEF3O95398 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC34.51■■■■□ 3.12
RAPGEF3O95398 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC34.51■■■■□ 3.12
RAPGEF3O95398 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC34.51■■■■□ 3.12
RAPGEF3O95398 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC34.51■■■■□ 3.12
RAPGEF3O95398 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC34.51■■■■□ 3.11
RAPGEF3O95398 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC34.5■■■■□ 3.11
RAPGEF3O95398 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC34.49■■■■□ 3.11
RAPGEF3O95398 NT5C3AP1-201ENST00000394500 1012 ntBASIC34.49■■■■□ 3.11
RAPGEF3O95398 AC026185.1-201ENST00000445748 174 ntBASIC34.49■■■■□ 3.11
RAPGEF3O95398 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC34.49■■■■□ 3.11
RAPGEF3O95398 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
RAPGEF3O95398 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC34.48■■■■□ 3.11
RAPGEF3O95398 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC34.48■■■■□ 3.11
RAPGEF3O95398 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC34.48■■■■□ 3.11
RAPGEF3O95398 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC34.48■■■■□ 3.11
RAPGEF3O95398 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC34.48■■■■□ 3.11
RAPGEF3O95398 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC34.48■■■■□ 3.11
RAPGEF3O95398 CROCCP5-201ENST00000436658 830 ntBASIC34.48■■■■□ 3.11
RAPGEF3O95398 AP005435.1-201ENST00000529293 1178 ntBASIC34.48■■■■□ 3.11
RAPGEF3O95398 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC34.48■■■■□ 3.11
RAPGEF3O95398 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC34.47■■■■□ 3.11
RAPGEF3O95398 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC34.47■■■■□ 3.11
RAPGEF3O95398 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC34.47■■■■□ 3.11
RAPGEF3O95398 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC34.47■■■■□ 3.11
RAPGEF3O95398 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC34.47■■■■□ 3.11
RAPGEF3O95398 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC34.47■■■■□ 3.11
RAPGEF3O95398 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC34.47■■■■□ 3.11
RAPGEF3O95398 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC34.47■■■■□ 3.11
RAPGEF3O95398 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC34.47■■■■□ 3.11
RAPGEF3O95398 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC34.47■■■■□ 3.11
RAPGEF3O95398 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC34.47■■■■□ 3.11
RAPGEF3O95398 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC34.47■■■■□ 3.11
RAPGEF3O95398 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC34.46■■■■□ 3.11
RAPGEF3O95398 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
RAPGEF3O95398 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC34.46■■■■□ 3.11
RAPGEF3O95398 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
RAPGEF3O95398 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC34.46■■■■□ 3.11
RAPGEF3O95398 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
RAPGEF3O95398 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC34.46■■■■□ 3.11
RAPGEF3O95398 AC137761.2-201ENST00000561729 223 ntBASIC34.46■■■■□ 3.11
RAPGEF3O95398 AC145350.3-201ENST00000569033 163 ntBASIC34.46■■■■□ 3.11
RAPGEF3O95398 AL109923.1-201ENST00000618799 583 ntBASIC34.46■■■■□ 3.11
RAPGEF3O95398 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
RAPGEF3O95398 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.11
RAPGEF3O95398 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC34.45■■■■□ 3.11
RAPGEF3O95398 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.1
RAPGEF3O95398 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC34.44■■■■□ 3.1
RAPGEF3O95398 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC34.44■■■■□ 3.1
RAPGEF3O95398 USF2-207ENST00000595068 1612 ntTSL 5 BASIC34.44■■■■□ 3.1
RAPGEF3O95398 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC34.44■■■■□ 3.1
RAPGEF3O95398 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC34.44■■■■□ 3.1
RAPGEF3O95398 AC010525.1-201ENST00000585559 441 ntBASIC34.44■■■■□ 3.1
RAPGEF3O95398 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC34.44■■■■□ 3.1
RAPGEF3O95398 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC34.43■■■■□ 3.1
RAPGEF3O95398 STX7-201ENST00000367937 1090 ntTSL 5 BASIC34.43■■■■□ 3.1
RAPGEF3O95398 AC016769.1-201ENST00000409132 1010 ntBASIC34.43■■■■□ 3.1
RAPGEF3O95398 GAS2L1P2-201ENST00000436355 1356 ntBASIC34.43■■■■□ 3.1
RAPGEF3O95398 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC34.43■■■■□ 3.1
RAPGEF3O95398 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC34.43■■■■□ 3.1
RAPGEF3O95398 AC091060.1-201ENST00000623524 1766 ntBASIC34.43■■■■□ 3.1
RAPGEF3O95398 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC34.43■■■■□ 3.1
RAPGEF3O95398 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC34.43■■■■□ 3.1
RAPGEF3O95398 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC34.43■■■■□ 3.1
RAPGEF3O95398 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC34.43■■■■□ 3.1
RAPGEF3O95398 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC34.42■■■■□ 3.1
RAPGEF3O95398 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC34.42■■■■□ 3.1
RAPGEF3O95398 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC34.41■■■■□ 3.1
RAPGEF3O95398 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC34.41■■■■□ 3.1
RAPGEF3O95398 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC34.41■■■■□ 3.1
RAPGEF3O95398 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC34.41■■■■□ 3.1
RAPGEF3O95398 HSCB-202ENST00000398941 955 ntTSL 2 BASIC34.41■■■■□ 3.1
RAPGEF3O95398 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC34.41■■■■□ 3.1
RAPGEF3O95398 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC34.41■■■■□ 3.1
RAPGEF3O95398 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
RAPGEF3O95398 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC34.4■■■■□ 3.1
RAPGEF3O95398 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
RAPGEF3O95398 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
RAPGEF3O95398 LHPP-203ENST00000392757 840 ntTSL 3 BASIC34.4■■■■□ 3.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms