Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC25.5■■□□□ 1.67
MSH4O15457 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC25.5■■□□□ 1.67
MSH4O15457 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
MSH4O15457 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC25.49■■□□□ 1.67
MSH4O15457 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
MSH4O15457 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC25.49■■□□□ 1.67
MSH4O15457 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
MSH4O15457 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC25.49■■□□□ 1.67
MSH4O15457 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC25.49■■□□□ 1.67
MSH4O15457 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
MSH4O15457 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC25.48■■□□□ 1.67
MSH4O15457 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
MSH4O15457 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
MSH4O15457 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
MSH4O15457 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
MSH4O15457 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
MSH4O15457 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
MSH4O15457 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC25.48■■□□□ 1.67
MSH4O15457 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC25.47■■□□□ 1.67
MSH4O15457 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
MSH4O15457 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
MSH4O15457 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
MSH4O15457 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
MSH4O15457 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
MSH4O15457 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
MSH4O15457 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
MSH4O15457 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC25.47■■□□□ 1.67
MSH4O15457 MTURN-203ENST00000409688 843 ntTSL 2 BASIC25.47■■□□□ 1.67
MSH4O15457 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC25.47■■□□□ 1.67
MSH4O15457 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC25.47■■□□□ 1.67
MSH4O15457 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
MSH4O15457 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
MSH4O15457 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC25.46■■□□□ 1.67
MSH4O15457 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC25.46■■□□□ 1.67
MSH4O15457 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
MSH4O15457 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
MSH4O15457 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
MSH4O15457 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC25.46■■□□□ 1.67
MSH4O15457 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC25.46■■□□□ 1.67
MSH4O15457 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
MSH4O15457 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
MSH4O15457 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
MSH4O15457 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC25.45■■□□□ 1.67
MSH4O15457 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.67
MSH4O15457 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC25.45■■□□□ 1.66
MSH4O15457 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC25.45■■□□□ 1.66
MSH4O15457 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC25.45■■□□□ 1.66
MSH4O15457 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC25.45■■□□□ 1.66
MSH4O15457 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC25.45■■□□□ 1.66
MSH4O15457 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
MSH4O15457 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
MSH4O15457 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC25.45■■□□□ 1.66
MSH4O15457 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC25.45■■□□□ 1.66
MSH4O15457 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
MSH4O15457 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC25.45■■□□□ 1.66
MSH4O15457 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC25.44■■□□□ 1.66
MSH4O15457 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
MSH4O15457 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
MSH4O15457 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
MSH4O15457 ASB1-202ENST00000409297 878 ntTSL 5 BASIC25.44■■□□□ 1.66
MSH4O15457 AC099791.2-201ENST00000605725 427 ntBASIC25.44■■□□□ 1.66
MSH4O15457 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC25.44■■□□□ 1.66
MSH4O15457 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
MSH4O15457 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
MSH4O15457 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
MSH4O15457 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC25.43■■□□□ 1.66
MSH4O15457 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC25.43■■□□□ 1.66
MSH4O15457 VGF-203ENST00000611537 1622 ntTSL 5 BASIC25.43■■□□□ 1.66
MSH4O15457 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
MSH4O15457 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
MSH4O15457 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
MSH4O15457 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
MSH4O15457 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC25.42■■□□□ 1.66
MSH4O15457 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
MSH4O15457 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
MSH4O15457 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
MSH4O15457 AC096631.2-201ENST00000436136 790 ntBASIC25.42■■□□□ 1.66
MSH4O15457 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
MSH4O15457 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC25.42■■□□□ 1.66
MSH4O15457 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
MSH4O15457 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC25.42■■□□□ 1.66
MSH4O15457 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
MSH4O15457 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
MSH4O15457 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
MSH4O15457 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
MSH4O15457 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
MSH4O15457 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC25.41■■□□□ 1.66
MSH4O15457 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC25.41■■□□□ 1.66
MSH4O15457 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
MSH4O15457 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
MSH4O15457 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
MSH4O15457 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC25.41■■□□□ 1.66
MSH4O15457 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC25.41■■□□□ 1.66
MSH4O15457 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
MSH4O15457 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
MSH4O15457 NALT1-201ENST00000429224 738 ntTSL 5 BASIC25.4■■□□□ 1.66
MSH4O15457 AC110285.6-201ENST00000617652 491 ntBASIC25.4■■□□□ 1.66
MSH4O15457 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC25.4■■□□□ 1.66
MSH4O15457 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC25.4■■□□□ 1.66
MSH4O15457 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms