Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.82■■□□□ 1.08
CACNA1AO00555 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC21.82■■□□□ 1.08
CACNA1AO00555 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.82■■□□□ 1.08
CACNA1AO00555 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.82■■□□□ 1.08
CACNA1AO00555 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC21.82■■□□□ 1.08
CACNA1AO00555 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
CACNA1AO00555 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.81■■□□□ 1.08
CACNA1AO00555 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.81■■□□□ 1.08
CACNA1AO00555 AP006294.2-201ENST00000641667 209 ntBASIC21.81■■□□□ 1.08
CACNA1AO00555 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CACNA1AO00555 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC21.81■■□□□ 1.08
CACNA1AO00555 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CACNA1AO00555 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC21.81■■□□□ 1.08
CACNA1AO00555 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.81■■□□□ 1.08
CACNA1AO00555 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CACNA1AO00555 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CACNA1AO00555 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CACNA1AO00555 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.8■■□□□ 1.08
CACNA1AO00555 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.8■■□□□ 1.08
CACNA1AO00555 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CACNA1AO00555 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC21.8■■□□□ 1.08
CACNA1AO00555 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.8■■□□□ 1.08
CACNA1AO00555 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC21.8■■□□□ 1.08
CACNA1AO00555 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC21.8■■□□□ 1.08
CACNA1AO00555 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CACNA1AO00555 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC21.79■■□□□ 1.08
CACNA1AO00555 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.79■■□□□ 1.08
CACNA1AO00555 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.79■■□□□ 1.08
CACNA1AO00555 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC21.79■■□□□ 1.08
CACNA1AO00555 AC011767.1-201ENST00000617410 1153 ntBASIC21.79■■□□□ 1.08
CACNA1AO00555 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CACNA1AO00555 KRT19P1-201ENST00000405746 1186 ntBASIC21.78■■□□□ 1.08
CACNA1AO00555 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CACNA1AO00555 AC009086.3-201ENST00000623486 1008 ntBASIC21.78■■□□□ 1.08
CACNA1AO00555 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CACNA1AO00555 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CACNA1AO00555 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.78■■□□□ 1.08
CACNA1AO00555 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CACNA1AO00555 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.78■■□□□ 1.08
CACNA1AO00555 AC091060.1-201ENST00000623524 1766 ntBASIC21.78■■□□□ 1.08
CACNA1AO00555 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
CACNA1AO00555 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CACNA1AO00555 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CACNA1AO00555 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CACNA1AO00555 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CACNA1AO00555 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CACNA1AO00555 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CACNA1AO00555 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CACNA1AO00555 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
CACNA1AO00555 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
CACNA1AO00555 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.76■■□□□ 1.07
CACNA1AO00555 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.76■■□□□ 1.07
CACNA1AO00555 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CACNA1AO00555 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CACNA1AO00555 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.76■■□□□ 1.07
CACNA1AO00555 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CACNA1AO00555 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.76■■□□□ 1.07
CACNA1AO00555 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CACNA1AO00555 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
CACNA1AO00555 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.76■■□□□ 1.07
CACNA1AO00555 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.76■■□□□ 1.07
CACNA1AO00555 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CACNA1AO00555 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CACNA1AO00555 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC21.75■■□□□ 1.07
CACNA1AO00555 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CACNA1AO00555 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.75■■□□□ 1.07
CACNA1AO00555 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21.75■■□□□ 1.07
CACNA1AO00555 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.75■■□□□ 1.07
CACNA1AO00555 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CACNA1AO00555 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.75■■□□□ 1.07
CACNA1AO00555 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
CACNA1AO00555 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
CACNA1AO00555 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CACNA1AO00555 AL121832.2-201ENST00000610979 668 ntBASIC21.74■■□□□ 1.07
CACNA1AO00555 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CACNA1AO00555 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CACNA1AO00555 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CACNA1AO00555 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CACNA1AO00555 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CACNA1AO00555 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CACNA1AO00555 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CACNA1AO00555 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CACNA1AO00555 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CACNA1AO00555 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.73■■□□□ 1.07
CACNA1AO00555 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.73■■□□□ 1.07
CACNA1AO00555 DUSP5P2-201ENST00000426873 1033 ntBASIC21.73■■□□□ 1.07
CACNA1AO00555 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
CACNA1AO00555 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CACNA1AO00555 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.73■■□□□ 1.07
CACNA1AO00555 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CACNA1AO00555 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC21.73■■□□□ 1.07
CACNA1AO00555 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.73■■□□□ 1.07
CACNA1AO00555 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CACNA1AO00555 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.72■■□□□ 1.07
CACNA1AO00555 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC21.72■■□□□ 1.07
CACNA1AO00555 RPS2P4-201ENST00000476944 856 ntBASIC21.72■■□□□ 1.07
CACNA1AO00555 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.72■■□□□ 1.07
CACNA1AO00555 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
CACNA1AO00555 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CACNA1AO00555 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms