Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CBX4O00257 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CBX4O00257 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CBX4O00257 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CBX4O00257 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CBX4O00257 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CBX4O00257 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CBX4O00257 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
CBX4O00257 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CBX4O00257 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CBX4O00257 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CBX4O00257 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC23.08■■□□□ 1.29
CBX4O00257 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC23.08■■□□□ 1.29
CBX4O00257 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC23.08■■□□□ 1.29
CBX4O00257 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CBX4O00257 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
CBX4O00257 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
CBX4O00257 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.28
CBX4O00257 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.28
CBX4O00257 GATM-206ENST00000558336 1522 ntTSL 2 BASIC23.08■■□□□ 1.28
CBX4O00257 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC23.07■■□□□ 1.28
CBX4O00257 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC23.07■■□□□ 1.28
CBX4O00257 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CBX4O00257 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CBX4O00257 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
CBX4O00257 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
CBX4O00257 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC23.06■■□□□ 1.28
CBX4O00257 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CBX4O00257 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
CBX4O00257 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CBX4O00257 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
CBX4O00257 AC096631.2-201ENST00000436136 790 ntBASIC23.06■■□□□ 1.28
CBX4O00257 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CBX4O00257 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC23.06■■□□□ 1.28
CBX4O00257 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC23.06■■□□□ 1.28
CBX4O00257 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CBX4O00257 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CBX4O00257 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CBX4O00257 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CBX4O00257 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CBX4O00257 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CBX4O00257 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CBX4O00257 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CBX4O00257 C17orf82-201ENST00000623772 1530 ntBASIC23.04■■□□□ 1.28
CBX4O00257 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
CBX4O00257 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
CBX4O00257 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC23.04■■□□□ 1.28
CBX4O00257 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
CBX4O00257 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
CBX4O00257 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
CBX4O00257 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CBX4O00257 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
CBX4O00257 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CBX4O00257 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
CBX4O00257 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC23.03■■□□□ 1.28
CBX4O00257 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC23.03■■□□□ 1.28
CBX4O00257 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC23.03■■□□□ 1.28
CBX4O00257 NKILA-201ENST00000613231 537 ntTSL 4 BASIC23.03■■□□□ 1.28
CBX4O00257 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC23.03■■□□□ 1.28
CBX4O00257 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
CBX4O00257 AC093323.1-202ENST00000635031 2045 ntBASIC23.03■■□□□ 1.28
CBX4O00257 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CBX4O00257 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CBX4O00257 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CBX4O00257 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CBX4O00257 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC23.02■■□□□ 1.28
CBX4O00257 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
CBX4O00257 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC23.02■■□□□ 1.28
CBX4O00257 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC23.02■■□□□ 1.28
CBX4O00257 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CBX4O00257 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CBX4O00257 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CBX4O00257 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.27
CBX4O00257 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC23.01■■□□□ 1.27
CBX4O00257 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CBX4O00257 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CBX4O00257 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC23.01■■□□□ 1.27
CBX4O00257 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.01■■□□□ 1.27
CBX4O00257 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CBX4O00257 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CBX4O00257 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CBX4O00257 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
CBX4O00257 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
CBX4O00257 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
CBX4O00257 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
CBX4O00257 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC23■■□□□ 1.27
CBX4O00257 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC23■■□□□ 1.27
CBX4O00257 AC005837.3-201ENST00000612163 286 ntBASIC23■■□□□ 1.27
CBX4O00257 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
CBX4O00257 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CBX4O00257 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC22.99■■□□□ 1.27
CBX4O00257 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC22.99■■□□□ 1.27
CBX4O00257 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CBX4O00257 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CBX4O00257 AC099791.2-201ENST00000605725 427 ntBASIC22.99■■□□□ 1.27
CBX4O00257 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
CBX4O00257 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CBX4O00257 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CBX4O00257 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CBX4O00257 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms