Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 ECI2-207ENST00000465828 1548 ntTSL 5 BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 DLG4-206ENST00000485100 1004 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 AC008494.1-201ENST00000497612 796 ntBASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 AC012358.2-201ENST00000430010 1434 ntBASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 TRIB1-203ENST00000520847 1332 ntTSL 2 BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 FTH1P18-201ENST00000412071 549 ntBASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 SDCBP2P1-201ENST00000416115 614 ntBASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 AL359182.1-201ENST00000435915 469 ntTSL 3 BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 SLC25A15P1-201ENST00000456738 342 ntBASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 AL121790.2-202ENST00000556024 363 ntTSL 5 BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 AC137723.2-201ENST00000623540 398 ntBASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHANK3Q9BYB0 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 GOLGA8IP-202ENST00000611635 2100 ntBASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 CROT-203ENST00000419147 2959 ntTSL 2 BASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 OR7E12P-201ENST00000344740 973 ntBASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 GRP-202ENST00000420468 579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 ABCC6P1-203ENST00000565566 1170 ntBASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 IFNL3P1-201ENST00000595082 501 ntBASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 POLR2F-213ENST00000606538 760 ntTSL 2 BASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 NRSN2-206ENST00000608736 712 ntTSL 3 BASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 AC138627.1-201ENST00000641127 1257 ntBASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SHANK3Q9BYB0 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
SHANK3Q9BYB0 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SHANK3Q9BYB0 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SHANK3Q9BYB0 AP000437.1-201ENST00000624057 2085 ntBASIC17.77■□□□□ 0.43
SHANK3Q9BYB0 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
SHANK3Q9BYB0 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
SHANK3Q9BYB0 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 CMTM5-204ENST00000382809 378 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 MED15P3-201ENST00000413613 326 ntBASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 MTHFD2P7-201ENST00000483867 983 ntBASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 EEF1DP7-201ENST00000580496 513 ntBASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 AL137028.2-201ENST00000614601 256 ntBASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 LINC01012-203ENST00000628762 743 ntTSL 5 BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 CTRL-205ENST00000574481 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 AC040160.2-201ENST00000623816 1675 ntBASIC17.76■□□□□ 0.43
SHANK3Q9BYB0 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms