Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 KLK3-207ENST00000595952 969 ntTSL 3 BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLHC1Q8NHS4 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
CLHC1Q8NHS4 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
CLHC1Q8NHS4 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
CLHC1Q8NHS4 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.83□□□□□ -0.19
CLHC1Q8NHS4 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC13.83□□□□□ -0.19
CLHC1Q8NHS4 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CLHC1Q8NHS4 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 E2F3P2-201ENST00000447755 1422 ntBASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 AC073548.1-201ENST00000624088 1882 ntBASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 MIR326-201ENST00000362220 95 ntBASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 COQ6-210ENST00000554920 649 ntTSL 3 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 RPL28-206ENST00000558752 671 ntTSL 3 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 AL445209.1-201ENST00000607269 3491 ntBASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLHC1Q8NHS4 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 FAS-202ENST00000352159 1722 ntTSL 5 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 SHC1P1-201ENST00000425230 1745 ntBASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 AC015818.8-201ENST00000587907 1519 ntBASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 TMBIM7P-202ENST00000641474 1516 ntBASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLHC1Q8NHS4 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms