Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 AC234644.1-201ENST00000406065 370 ntBASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 LINC00265-2P-201ENST00000413372 782 ntBASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 RN7SL788P-201ENST00000460504 316 ntBASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 HKR1-225ENST00000592168 566 ntTSL 4 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 CFTRP2-201ENST00000634304 199 ntBASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 FAM90A21P-201ENST00000510875 1396 ntBASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 FAM90A15P-201ENST00000514465 1395 ntBASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 FAM90A6P-201ENST00000515148 1394 ntBASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 FAM90A16P-201ENST00000526662 1395 ntBASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 FAM90A9P-201ENST00000527940 1395 ntBASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 FAM90A5P-201ENST00000528738 1395 ntBASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 FAM90A14P-201ENST00000530386 1395 ntBASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 FAM90A13P-201ENST00000534703 1395 ntBASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 LST1-205ENST00000376089 680 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 LST1-206ENST00000376090 689 ntTSL 2 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 LST1-208ENST00000376093 648 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 LST1-209ENST00000376096 565 ntTSL 2 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 LST1-210ENST00000376099 610 ntTSL 2 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 LST1-212ENST00000396101 459 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 LST1-214ENST00000418507 726 ntTSL 2 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 LST1-217ENST00000438075 764 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 GRPEL2P1-201ENST00000453145 339 ntBASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 SNORD3B-1-201ENST00000577988 758 ntBASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 RN7SL718P-201ENST00000581254 303 ntBASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 AP005264.5-201ENST00000590066 467 ntBASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 FGD5P1-202ENST00000614866 2498 ntBASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 KRT8P18-201ENST00000413425 1445 ntBASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NPAS3Q8IXF0 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NPAS3Q8IXF0 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms