Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.22■□□□□ 0.03
LIG3P49916 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC15.22■□□□□ 0.03
LIG3P49916 AC099336.1-201ENST00000417053 1171 ntBASIC15.22■□□□□ 0.03
LIG3P49916 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC15.22■□□□□ 0.03
LIG3P49916 CSF2RBP1-201ENST00000447905 391 ntBASIC15.22■□□□□ 0.03
LIG3P49916 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
LIG3P49916 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC15.22■□□□□ 0.03
LIG3P49916 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC15.22■□□□□ 0.03
LIG3P49916 RHOXF1P1-202ENST00000635473 501 ntBASIC15.22■□□□□ 0.03
LIG3P49916 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.22■□□□□ 0.03
LIG3P49916 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC15.22■□□□□ 0.03
LIG3P49916 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 KIAA1191-202ENST00000393725 2700 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC15.22■□□□□ 0.03
LIG3P49916 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC15.22■□□□□ 0.03
LIG3P49916 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC15.22■□□□□ 0.03
LIG3P49916 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIG3P49916 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIG3P49916 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.21■□□□□ 0.03
LIG3P49916 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LIG3P49916 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIG3P49916 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.21■□□□□ 0.03
LIG3P49916 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIG3P49916 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC15.21■□□□□ 0.03
LIG3P49916 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIG3P49916 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LIG3P49916 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIG3P49916 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
LIG3P49916 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIG3P49916 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIG3P49916 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
LIG3P49916 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIG3P49916 HLA-V-201ENST00000429037 534 ntBASIC15.21■□□□□ 0.03
LIG3P49916 EIF3FP3-201ENST00000434851 1086 ntBASIC15.21■□□□□ 0.03
LIG3P49916 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
LIG3P49916 AC007274.1-201ENST00000439805 662 ntBASIC15.21■□□□□ 0.03
LIG3P49916 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC15.21■□□□□ 0.03
LIG3P49916 BNIP3P42-201ENST00000454982 569 ntBASIC15.21■□□□□ 0.03
LIG3P49916 FO681548.1-201ENST00000455617 1132 ntBASIC15.21■□□□□ 0.03
LIG3P49916 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC15.21■□□□□ 0.03
LIG3P49916 MFF-223ENST00000524634 647 ntTSL 2 BASIC15.21■□□□□ 0.03
LIG3P49916 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LIG3P49916 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.21■□□□□ 0.03
LIG3P49916 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.21■□□□□ 0.03
LIG3P49916 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIG3P49916 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.21■□□□□ 0.03
LIG3P49916 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.21■□□□□ 0.03
LIG3P49916 BNIP3P29-201ENST00000598302 571 ntBASIC15.21■□□□□ 0.03
LIG3P49916 AC011447.5-201ENST00000616168 564 ntBASIC15.21■□□□□ 0.03
LIG3P49916 ETV2-208ENST00000621247 941 ntTSL 5 BASIC15.21■□□□□ 0.03
LIG3P49916 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LIG3P49916 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC15.21■□□□□ 0.03
LIG3P49916 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIG3P49916 TGM1-201ENST00000206765 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIG3P49916 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIG3P49916 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIG3P49916 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC15.21■□□□□ 0.03
LIG3P49916 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIG3P49916 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
LIG3P49916 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC15.21■□□□□ 0.02
LIG3P49916 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
LIG3P49916 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
LIG3P49916 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
LIG3P49916 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.02
LIG3P49916 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
LIG3P49916 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
LIG3P49916 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
LIG3P49916 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
LIG3P49916 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.2■□□□□ 0.02
LIG3P49916 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC15.2■□□□□ 0.02
LIG3P49916 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
LIG3P49916 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.2■□□□□ 0.02
LIG3P49916 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.2■□□□□ 0.02
LIG3P49916 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 RBM44-201ENST00000316997 4282 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
LIG3P49916 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
LIG3P49916 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
LIG3P49916 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.2■□□□□ 0.02
LIG3P49916 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.2■□□□□ 0.02
LIG3P49916 AC026954.1-201ENST00000429771 1293 ntBASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms