Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC14.64□□□□□ -0.07
COL9A1P20849 BOLA3P2-201ENST00000586496 323 ntBASIC14.64□□□□□ -0.07
COL9A1P20849 TYMSP2-201ENST00000589501 424 ntBASIC14.64□□□□□ -0.07
COL9A1P20849 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC14.64□□□□□ -0.07
COL9A1P20849 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC14.64□□□□□ -0.07
COL9A1P20849 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 MIR7848-201ENST00000617402 101 ntBASIC14.64□□□□□ -0.07
COL9A1P20849 AC241585.2-202ENST00000621798 1015 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 AC023510.2-201ENST00000622162 746 ntBASIC14.64□□□□□ -0.07
COL9A1P20849 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC14.64□□□□□ -0.07
COL9A1P20849 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC14.64□□□□□ -0.07
COL9A1P20849 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.64□□□□□ -0.07
COL9A1P20849 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.64□□□□□ -0.07
COL9A1P20849 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC14.64□□□□□ -0.07
COL9A1P20849 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
COL9A1P20849 LINC00528-201ENST00000600723 2160 ntBASIC14.64□□□□□ -0.07
COL9A1P20849 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
COL9A1P20849 CHAC2-201ENST00000295304 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 SEPT7P7-201ENST00000420492 1301 ntBASIC14.64□□□□□ -0.07
COL9A1P20849 AC069061.4-201ENST00000581294 1347 ntBASIC14.64□□□□□ -0.07
COL9A1P20849 AC124944.3-201ENST00000607976 1304 ntBASIC14.64□□□□□ -0.07
COL9A1P20849 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 AC013268.4-201ENST00000637413 2228 ntBASIC14.64□□□□□ -0.07
COL9A1P20849 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC14.63□□□□□ -0.07
COL9A1P20849 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
COL9A1P20849 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.63□□□□□ -0.07
COL9A1P20849 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
COL9A1P20849 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
COL9A1P20849 AC006372.4-201ENST00000624122 1543 ntBASIC14.63□□□□□ -0.07
COL9A1P20849 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.63□□□□□ -0.07
COL9A1P20849 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC14.63□□□□□ -0.07
COL9A1P20849 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC14.63□□□□□ -0.07
COL9A1P20849 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC14.63□□□□□ -0.07
COL9A1P20849 EAF2-202ENST00000451944 960 ntTSL 2 BASIC14.63□□□□□ -0.07
COL9A1P20849 SEPT14P1-201ENST00000458703 648 ntBASIC14.63□□□□□ -0.07
COL9A1P20849 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC14.63□□□□□ -0.07
COL9A1P20849 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC14.63□□□□□ -0.07
COL9A1P20849 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC14.63□□□□□ -0.07
COL9A1P20849 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC14.63□□□□□ -0.07
COL9A1P20849 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC14.63□□□□□ -0.07
COL9A1P20849 AL357094.1-201ENST00000603845 844 ntBASIC14.63□□□□□ -0.07
COL9A1P20849 CSH2-207ENST00000613718 666 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC14.63□□□□□ -0.07
COL9A1P20849 AC080188.3-201ENST00000624842 748 ntBASIC14.63□□□□□ -0.07
COL9A1P20849 RARS-210ENST00000626454 177 ntTSL 5 BASIC14.63□□□□□ -0.07
COL9A1P20849 AC002511.3-201ENST00000638098 420 ntBASIC14.63□□□□□ -0.07
COL9A1P20849 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.63□□□□□ -0.07
COL9A1P20849 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
COL9A1P20849 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.63□□□□□ -0.07
COL9A1P20849 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.63□□□□□ -0.07
COL9A1P20849 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 BCKDHA-202ENST00000457836 1745 ntTSL 2 BASIC14.63□□□□□ -0.07
COL9A1P20849 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC14.63□□□□□ -0.07
COL9A1P20849 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC14.63□□□□□ -0.07
COL9A1P20849 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.63□□□□□ -0.07
COL9A1P20849 METTL22-203ENST00000561758 1312 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
COL9A1P20849 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL9A1P20849 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.63□□□□□ -0.07
COL9A1P20849 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.63□□□□□ -0.07
COL9A1P20849 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.63□□□□□ -0.07
COL9A1P20849 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL9A1P20849 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL9A1P20849 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
COL9A1P20849 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
COL9A1P20849 AC105917.1-201ENST00000506637 2539 ntBASIC14.62□□□□□ -0.07
COL9A1P20849 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL9A1P20849 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC14.62□□□□□ -0.07
COL9A1P20849 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL9A1P20849 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.62□□□□□ -0.07
COL9A1P20849 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL9A1P20849 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL9A1P20849 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
COL9A1P20849 FTHL17-201ENST00000359202 813 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
COL9A1P20849 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.62□□□□□ -0.07
COL9A1P20849 OR10N1P-201ENST00000392758 869 ntBASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms