Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DOAP06340 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DOAP06340 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HLA-DOAP06340 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DOAP06340 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DOAP06340 SHMT1P1-201ENST00000419974 1312 ntBASIC16.79■□□□□ 0.28
HLA-DOAP06340 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HLA-DOAP06340 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DOAP06340 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DOAP06340 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DOAP06340 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DOAP06340 HMGA1P1-201ENST00000415560 1062 ntBASIC16.79■□□□□ 0.28
HLA-DOAP06340 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DOAP06340 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC16.79■□□□□ 0.28
HLA-DOAP06340 AC012362.1-201ENST00000434906 739 ntBASIC16.79■□□□□ 0.28
HLA-DOAP06340 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC16.79■□□□□ 0.28
HLA-DOAP06340 LYPLA2P1-203ENST00000447689 696 ntBASIC16.79■□□□□ 0.28
HLA-DOAP06340 RGS5-216ENST00000449680 788 ntTSL 3 BASIC16.79■□□□□ 0.28
HLA-DOAP06340 KRT18P15-201ENST00000458108 1291 ntBASIC16.79■□□□□ 0.28
HLA-DOAP06340 RN7SL767P-201ENST00000493013 295 ntBASIC16.79■□□□□ 0.28
HLA-DOAP06340 SLC25A15P3-201ENST00000505530 290 ntBASIC16.79■□□□□ 0.28
HLA-DOAP06340 NEU3-207ENST00000534628 746 ntTSL 2 BASIC16.79■□□□□ 0.28
HLA-DOAP06340 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC16.79■□□□□ 0.28
HLA-DOAP06340 DBP-202ENST00000593500 712 ntTSL 2 BASIC16.79■□□□□ 0.28
HLA-DOAP06340 AC140113.1-201ENST00000603467 169 ntBASIC16.79■□□□□ 0.28
HLA-DOAP06340 TP53-221ENST00000615910 1149 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DOAP06340 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DOAP06340 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DOAP06340 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DOAP06340 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DOAP06340 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DOAP06340 AC025271.4-201ENST00000621477 1726 ntBASIC16.79■□□□□ 0.28
HLA-DOAP06340 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DOAP06340 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC16.79■□□□□ 0.28
HLA-DOAP06340 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HLA-DOAP06340 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC16.79■□□□□ 0.28
HLA-DOAP06340 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HLA-DOAP06340 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DOAP06340 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DOAP06340 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
HLA-DOAP06340 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DOAP06340 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HLA-DOAP06340 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DOAP06340 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DOAP06340 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DOAP06340 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DOAP06340 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DOAP06340 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DOAP06340 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
HLA-DOAP06340 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC16.78■□□□□ 0.28
HLA-DOAP06340 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DOAP06340 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DOAP06340 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DOAP06340 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DOAP06340 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.78■□□□□ 0.28
HLA-DOAP06340 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC16.78■□□□□ 0.28
HLA-DOAP06340 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DOAP06340 AC004837.1-201ENST00000446267 564 ntBASIC16.78■□□□□ 0.28
HLA-DOAP06340 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC16.78■□□□□ 0.28
HLA-DOAP06340 AC095040.1-201ENST00000513286 675 ntBASIC16.78■□□□□ 0.28
HLA-DOAP06340 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC16.78■□□□□ 0.28
HLA-DOAP06340 KLF17P1-201ENST00000547105 1126 ntBASIC16.78■□□□□ 0.28
HLA-DOAP06340 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC16.78■□□□□ 0.28
HLA-DOAP06340 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC16.78■□□□□ 0.28
HLA-DOAP06340 AC007952.4-201ENST00000573866 637 ntBASIC16.78■□□□□ 0.28
HLA-DOAP06340 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC16.78■□□□□ 0.28
HLA-DOAP06340 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC16.78■□□□□ 0.28
HLA-DOAP06340 AC005041.3-201ENST00000606287 649 ntBASIC16.78■□□□□ 0.28
HLA-DOAP06340 AC105137.3-201ENST00000617588 984 ntBASIC16.78■□□□□ 0.28
HLA-DOAP06340 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC16.78■□□□□ 0.28
HLA-DOAP06340 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DOAP06340 AC007686.3-201ENST00000619017 3487 ntBASIC16.78■□□□□ 0.28
HLA-DOAP06340 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DOAP06340 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
HLA-DOAP06340 ADK-205ENST00000539909 1866 ntTSL 2 BASIC16.78■□□□□ 0.28
HLA-DOAP06340 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HLA-DOAP06340 AC140479.7-201ENST00000636301 2332 ntBASIC16.78■□□□□ 0.28
HLA-DOAP06340 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
HLA-DOAP06340 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DOAP06340 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DOAP06340 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
HLA-DOAP06340 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DOAP06340 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DOAP06340 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DOAP06340 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC16.77■□□□□ 0.28
HLA-DOAP06340 AL390755.1-201ENST00000623716 2027 ntBASIC16.77■□□□□ 0.28
HLA-DOAP06340 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DOAP06340 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DOAP06340 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
HLA-DOAP06340 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DOAP06340 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.28
HLA-DOAP06340 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DOAP06340 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DOAP06340 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DOAP06340 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DOAP06340 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HLA-DOAP06340 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
HLA-DOAP06340 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC16.77■□□□□ 0.28
HLA-DOAP06340 CELP-201ENST00000411440 1249 ntTSL 5 BASIC16.77■□□□□ 0.28
HLA-DOAP06340 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms