Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC067750.1-201ENST00000608826 6545 ntBASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 KRT8P21-201ENST00000430398 1491 ntBASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 LAP3P2-201ENST00000454686 1454 ntBASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.3□□□□□ -0.12
TRIM39Q9HCM9 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 AC140658.4-201ENST00000561990 352 ntBASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 AC090386.2-201ENST00000623010 1039 ntBASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 STK26-204ENST00000481105 1835 ntTSL 2 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 BX640514.1-201ENST00000583223 1918 ntBASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.29□□□□□ -0.12
TRIM39Q9HCM9 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 RERG-205ENST00000537647 935 ntTSL 2 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 HPD-204ENST00000543163 1709 ntTSL 5 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 MIR3188-201ENST00000583494 85 ntBASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC14.28□□□□□ -0.12
TRIM39Q9HCM9 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms