Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 PHBP18-201ENST00000546648 813 ntBASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 SEPT10-208ENST00000437928 1782 ntTSL 5 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 AC008741.2-201ENST00000612792 3115 ntBASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 AC090643.2-201ENST00000623442 2029 ntBASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 AL591806.3-201ENST00000289779 2096 ntAPPRIS P5 TSL 2 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 GOLGA8VP-201ENST00000559009 1798 ntBASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 KRTAP1-5-201ENST00000361883 1177 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 CFL1P6-201ENST00000400899 494 ntBASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 AK2P2-201ENST00000439142 405 ntBASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 AC015818.1-201ENST00000451011 244 ntBASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 MBP-230ENST00000528160 584 ntTSL 5 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 GACAT2-201ENST00000579368 818 ntTSL 2 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 AC015912.3-201ENST00000619432 348 ntBASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 AF013593.1-201ENST00000458074 1487 ntBASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 KRT8P25-201ENST00000473150 1456 ntBASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 OR2W3-201ENST00000360358 945 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 AL121994.1-201ENST00000413189 402 ntBASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 KRT19P4-201ENST00000443208 943 ntBASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 TPT1P6-201ENST00000458298 514 ntBASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 RNA5SP288-201ENST00000516075 93 ntBASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 AC009065.4-201ENST00000563734 543 ntTSL 3 BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
SHANK3Q9BYB0 AADACL4-201ENST00000376221 1575 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 DDC-213ENST00000617822 1809 ntTSL 3 BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 AL513497.1-201ENST00000624273 2083 ntBASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 RBMXP1-201ENST00000408004 1191 ntBASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 AC114812.4-201ENST00000506676 757 ntBASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 RN7SL440P-201ENST00000577855 343 ntBASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 AC007998.2-201ENST00000589258 455 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 KRT8P38-201ENST00000441370 1430 ntBASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHANK3Q9BYB0 LINC01658-201ENST00000320372 1578 ntTSL 2 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms