Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RN7SL277P-201ENST00000481521 288 ntBASIC14.88□□□□□ -0.03
PTPN9P43378 GOLGA2P8-201ENST00000505201 779 ntBASIC14.88□□□□□ -0.03
PTPN9P43378 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC14.88□□□□□ -0.03
PTPN9P43378 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
PTPN9P43378 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC14.88□□□□□ -0.03
PTPN9P43378 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
PTPN9P43378 AC100757.4-201ENST00000626934 759 ntBASIC14.88□□□□□ -0.03
PTPN9P43378 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN9P43378 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN9P43378 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN9P43378 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN9P43378 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC14.88□□□□□ -0.03
PTPN9P43378 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN9P43378 AC111170.3-201ENST00000624282 2464 ntBASIC14.88□□□□□ -0.03
PTPN9P43378 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC14.88□□□□□ -0.03
PTPN9P43378 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.88□□□□□ -0.03
PTPN9P43378 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC14.88□□□□□ -0.03
PTPN9P43378 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN9P43378 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN9P43378 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN9P43378 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
PTPN9P43378 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
PTPN9P43378 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
PTPN9P43378 AC079781.5-202ENST00000641784 3743 ntBASIC14.88□□□□□ -0.03
PTPN9P43378 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 GOLGA8IP-202ENST00000611635 2100 ntBASIC14.87□□□□□ -0.03
PTPN9P43378 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
PTPN9P43378 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC14.87□□□□□ -0.03
PTPN9P43378 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
PTPN9P43378 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC14.87□□□□□ -0.03
PTPN9P43378 CETP-203ENST00000566128 1733 ntTSL 5 BASIC14.87□□□□□ -0.03
PTPN9P43378 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
PTPN9P43378 RNA5SP359-201ENST00000364838 113 ntBASIC14.87□□□□□ -0.03
PTPN9P43378 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 NCR3-202ENST00000376071 541 ntTSL 5 BASIC14.87□□□□□ -0.03
PTPN9P43378 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC14.87□□□□□ -0.03
PTPN9P43378 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
PTPN9P43378 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC14.87□□□□□ -0.03
PTPN9P43378 AL008707.1-201ENST00000422498 534 ntBASIC14.87□□□□□ -0.03
PTPN9P43378 RN7SL530P-201ENST00000485097 298 ntBASIC14.87□□□□□ -0.03
PTPN9P43378 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC14.87□□□□□ -0.03
PTPN9P43378 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC14.87□□□□□ -0.03
PTPN9P43378 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 AC020914.3-201ENST00000594712 304 ntBASIC14.87□□□□□ -0.03
PTPN9P43378 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC14.87□□□□□ -0.03
PTPN9P43378 NAP1L6-202ENST00000641404 1222 ntBASIC14.87□□□□□ -0.03
PTPN9P43378 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 PPP1R26P4-201ENST00000619065 3527 ntBASIC14.87□□□□□ -0.03
PTPN9P43378 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
PTPN9P43378 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
PTPN9P43378 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC14.87□□□□□ -0.03
PTPN9P43378 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC14.87□□□□□ -0.03
PTPN9P43378 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 RCC2P1-201ENST00000452257 1476 ntBASIC14.87□□□□□ -0.03
PTPN9P43378 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
PTPN9P43378 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 TUBBP5-203ENST00000508529 1334 ntBASIC14.87□□□□□ -0.03
PTPN9P43378 BRD7P5-201ENST00000299197 1822 ntBASIC14.87□□□□□ -0.03
PTPN9P43378 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.87□□□□□ -0.03
PTPN9P43378 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 LINC02486-201ENST00000604157 3000 ntBASIC14.87□□□□□ -0.03
PTPN9P43378 AL928654.5-201ENST00000624831 2501 ntBASIC14.87□□□□□ -0.03
PTPN9P43378 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PTPN9P43378 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
PTPN9P43378 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
PTPN9P43378 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.86□□□□□ -0.03
PTPN9P43378 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
PTPN9P43378 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC14.86□□□□□ -0.03
PTPN9P43378 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC14.86□□□□□ -0.03
PTPN9P43378 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms