Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC12.54□□□□□ -0.4
COL8A1P27658 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC12.54□□□□□ -0.4
COL8A1P27658 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC12.54□□□□□ -0.4
COL8A1P27658 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC12.54□□□□□ -0.4
COL8A1P27658 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
COL8A1P27658 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
COL8A1P27658 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC12.54□□□□□ -0.4
COL8A1P27658 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC12.54□□□□□ -0.4
COL8A1P27658 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC12.54□□□□□ -0.4
COL8A1P27658 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 FAU-201ENST00000279259 461 ntTSL 2 BASIC12.54□□□□□ -0.4
COL8A1P27658 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
COL8A1P27658 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
COL8A1P27658 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC12.54□□□□□ -0.4
COL8A1P27658 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC12.54□□□□□ -0.4
COL8A1P27658 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC12.54□□□□□ -0.4
COL8A1P27658 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC12.54□□□□□ -0.4
COL8A1P27658 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC12.54□□□□□ -0.4
COL8A1P27658 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC12.54□□□□□ -0.4
COL8A1P27658 AC018638.5-201ENST00000450885 754 ntBASIC12.54□□□□□ -0.4
COL8A1P27658 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC12.54□□□□□ -0.4
COL8A1P27658 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC12.54□□□□□ -0.4
COL8A1P27658 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC12.54□□□□□ -0.4
COL8A1P27658 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC12.54□□□□□ -0.4
COL8A1P27658 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC12.54□□□□□ -0.4
COL8A1P27658 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
COL8A1P27658 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC12.54□□□□□ -0.4
COL8A1P27658 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
COL8A1P27658 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
COL8A1P27658 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
COL8A1P27658 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC12.54□□□□□ -0.4
COL8A1P27658 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
COL8A1P27658 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 LINC02228-204ENST00000642115 2962 ntBASIC12.54□□□□□ -0.4
COL8A1P27658 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
COL8A1P27658 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC12.53□□□□□ -0.4
COL8A1P27658 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC12.53□□□□□ -0.4
COL8A1P27658 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC12.53□□□□□ -0.4
COL8A1P27658 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC12.53□□□□□ -0.4
COL8A1P27658 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC12.53□□□□□ -0.4
COL8A1P27658 AC092570.1-201ENST00000414446 469 ntBASIC12.53□□□□□ -0.4
COL8A1P27658 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC12.53□□□□□ -0.4
COL8A1P27658 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC12.53□□□□□ -0.4
COL8A1P27658 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC12.53□□□□□ -0.4
COL8A1P27658 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC12.53□□□□□ -0.4
COL8A1P27658 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC12.53□□□□□ -0.4
COL8A1P27658 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 AC095040.1-201ENST00000513286 675 ntBASIC12.53□□□□□ -0.4
COL8A1P27658 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC12.53□□□□□ -0.4
COL8A1P27658 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
COL8A1P27658 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC12.53□□□□□ -0.4
COL8A1P27658 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC12.53□□□□□ -0.4
COL8A1P27658 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC12.53□□□□□ -0.4
COL8A1P27658 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC12.53□□□□□ -0.4
COL8A1P27658 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC12.53□□□□□ -0.4
COL8A1P27658 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL8A1P27658 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC12.53□□□□□ -0.4
COL8A1P27658 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms