Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
COL5A1P20908 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.37□□□□□ -0.27
COL5A1P20908 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 CTSL-202ENST00000342020 933 ntTSL 2 BASIC13.37□□□□□ -0.27
COL5A1P20908 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC13.37□□□□□ -0.27
COL5A1P20908 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC13.37□□□□□ -0.27
COL5A1P20908 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC13.37□□□□□ -0.27
COL5A1P20908 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC13.37□□□□□ -0.27
COL5A1P20908 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC13.37□□□□□ -0.27
COL5A1P20908 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC13.37□□□□□ -0.27
COL5A1P20908 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC13.37□□□□□ -0.27
COL5A1P20908 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC13.37□□□□□ -0.27
COL5A1P20908 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC13.37□□□□□ -0.27
COL5A1P20908 FAM226B-201ENST00000602508 1490 ntBASIC13.37□□□□□ -0.27
COL5A1P20908 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
COL5A1P20908 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
COL5A1P20908 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
COL5A1P20908 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 AC005089.1-201ENST00000619486 2241 ntBASIC13.37□□□□□ -0.27
COL5A1P20908 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC13.37□□□□□ -0.27
COL5A1P20908 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
COL5A1P20908 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC13.37□□□□□ -0.27
COL5A1P20908 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
COL5A1P20908 KRT18P33-201ENST00000398525 1043 ntBASIC13.36□□□□□ -0.27
COL5A1P20908 HNRNPA1P21-201ENST00000424115 961 ntBASIC13.36□□□□□ -0.27
COL5A1P20908 BCL2L12P1-201ENST00000508390 733 ntBASIC13.36□□□□□ -0.27
COL5A1P20908 AC113347.2-201ENST00000512350 279 ntBASIC13.36□□□□□ -0.27
COL5A1P20908 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC13.36□□□□□ -0.27
COL5A1P20908 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC13.36□□□□□ -0.27
COL5A1P20908 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC13.36□□□□□ -0.27
COL5A1P20908 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 EMC4-208ENST00000559078 599 ntTSL 3 BASIC13.36□□□□□ -0.27
COL5A1P20908 KRT8P34-201ENST00000577607 1044 ntBASIC13.36□□□□□ -0.27
COL5A1P20908 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC13.36□□□□□ -0.27
COL5A1P20908 BX322534.1-201ENST00000635574 241 ntBASIC13.36□□□□□ -0.27
COL5A1P20908 AC215524.1-201ENST00000635696 241 ntBASIC13.36□□□□□ -0.27
COL5A1P20908 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
COL5A1P20908 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC13.36□□□□□ -0.27
COL5A1P20908 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 TCAM1P-207ENST00000485295 1537 ntBASIC13.36□□□□□ -0.27
COL5A1P20908 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
COL5A1P20908 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
COL5A1P20908 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC13.36□□□□□ -0.27
COL5A1P20908 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
COL5A1P20908 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 AC023908.3-201ENST00000564211 3047 ntBASIC13.36□□□□□ -0.27
COL5A1P20908 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 AC016397.2-201ENST00000624848 1985 ntBASIC13.36□□□□□ -0.27
COL5A1P20908 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC13.36□□□□□ -0.27
COL5A1P20908 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
COL5A1P20908 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC13.36□□□□□ -0.27
COL5A1P20908 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC13.36□□□□□ -0.27
COL5A1P20908 AC092810.2-201ENST00000431570 362 ntBASIC13.36□□□□□ -0.27
COL5A1P20908 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC13.36□□□□□ -0.27
COL5A1P20908 AC133141.1-201ENST00000443015 339 ntBASIC13.36□□□□□ -0.27
COL5A1P20908 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC13.36□□□□□ -0.27
COL5A1P20908 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC13.36□□□□□ -0.27
COL5A1P20908 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC13.36□□□□□ -0.27
COL5A1P20908 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC13.36□□□□□ -0.27
COL5A1P20908 MIR4326-201ENST00000582203 59 ntBASIC13.36□□□□□ -0.27
COL5A1P20908 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC13.36□□□□□ -0.27
COL5A1P20908 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC13.36□□□□□ -0.27
COL5A1P20908 BAP1-211ENST00000615113 489 ntBASIC13.36□□□□□ -0.27
COL5A1P20908 MIR8071-1-201ENST00000616769 65 ntBASIC13.36□□□□□ -0.27
COL5A1P20908 MIR8071-2-201ENST00000616772 65 ntBASIC13.36□□□□□ -0.27
COL5A1P20908 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC13.36□□□□□ -0.27
COL5A1P20908 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC13.36□□□□□ -0.27
COL5A1P20908 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 CICP16-201ENST00000502609 2813 ntBASIC13.36□□□□□ -0.27
COL5A1P20908 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms