Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC14.7□□□□□ -0.06
HMGA1P17096 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 NORAD-201ENST00000565493 5339 ntBASIC14.7□□□□□ -0.06
HMGA1P17096 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.7□□□□□ -0.06
HMGA1P17096 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGA1P17096 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
HMGA1P17096 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
HMGA1P17096 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.69□□□□□ -0.06
HMGA1P17096 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.69□□□□□ -0.06
HMGA1P17096 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGA1P17096 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGA1P17096 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGA1P17096 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC14.69□□□□□ -0.06
HMGA1P17096 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGA1P17096 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGA1P17096 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
HMGA1P17096 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC14.69□□□□□ -0.06
HMGA1P17096 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGA1P17096 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGA1P17096 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGA1P17096 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGA1P17096 NME4-203ENST00000397722 1232 ntTSL 2 BASIC14.69□□□□□ -0.06
HMGA1P17096 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGA1P17096 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC14.69□□□□□ -0.06
HMGA1P17096 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGA1P17096 STK24P1-201ENST00000455035 1291 ntBASIC14.69□□□□□ -0.06
HMGA1P17096 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
HMGA1P17096 PPIA-208ENST00000489459 907 ntTSL 2 BASIC14.69□□□□□ -0.06
HMGA1P17096 RN7SL375P-201ENST00000492442 298 ntBASIC14.69□□□□□ -0.06
HMGA1P17096 AC084752.1-201ENST00000509766 622 ntBASIC14.69□□□□□ -0.06
HMGA1P17096 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC14.69□□□□□ -0.06
HMGA1P17096 AC226150.1-201ENST00000544259 466 ntBASIC14.69□□□□□ -0.06
HMGA1P17096 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC14.69□□□□□ -0.06
HMGA1P17096 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC14.69□□□□□ -0.06
HMGA1P17096 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGA1P17096 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC14.69□□□□□ -0.06
HMGA1P17096 AC132825.4-202ENST00000578792 434 ntBASIC14.69□□□□□ -0.06
HMGA1P17096 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGA1P17096 AL009176.1-201ENST00000607876 650 ntBASIC14.69□□□□□ -0.06
HMGA1P17096 PPIA-210ENST00000620047 827 ntTSL 5 BASIC14.69□□□□□ -0.06
HMGA1P17096 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC14.69□□□□□ -0.06
HMGA1P17096 GOLGA8UP-201ENST00000527159 1755 ntBASIC14.69□□□□□ -0.06
HMGA1P17096 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGA1P17096 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HMGA1P17096 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGA1P17096 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.69□□□□□ -0.06
HMGA1P17096 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGA1P17096 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.69□□□□□ -0.06
HMGA1P17096 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC14.69□□□□□ -0.06
HMGA1P17096 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
HMGA1P17096 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
HMGA1P17096 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.69□□□□□ -0.06
HMGA1P17096 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC14.69□□□□□ -0.06
HMGA1P17096 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGA1P17096 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.69□□□□□ -0.06
HMGA1P17096 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC14.68□□□□□ -0.06
HMGA1P17096 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC14.68□□□□□ -0.06
HMGA1P17096 AC067930.6-201ENST00000623257 4947 ntBASIC14.68□□□□□ -0.06
HMGA1P17096 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
HMGA1P17096 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
HMGA1P17096 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
HMGA1P17096 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC14.68□□□□□ -0.06
HMGA1P17096 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HMGA1P17096 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC14.68□□□□□ -0.06
HMGA1P17096 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
HMGA1P17096 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC14.68□□□□□ -0.06
HMGA1P17096 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC14.68□□□□□ -0.06
HMGA1P17096 PRSS3P1-201ENST00000503996 742 ntBASIC14.68□□□□□ -0.06
HMGA1P17096 AC093826.1-201ENST00000508655 993 ntBASIC14.68□□□□□ -0.06
HMGA1P17096 ALG1L6P-201ENST00000515248 758 ntBASIC14.68□□□□□ -0.06
HMGA1P17096 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC14.68□□□□□ -0.06
HMGA1P17096 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC14.68□□□□□ -0.06
HMGA1P17096 AL132994.1-201ENST00000554098 400 ntBASIC14.68□□□□□ -0.06
HMGA1P17096 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC14.68□□□□□ -0.06
HMGA1P17096 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC14.68□□□□□ -0.06
HMGA1P17096 MIR5196-201ENST00000578146 115 ntBASIC14.68□□□□□ -0.06
HMGA1P17096 NT5C-204ENST00000578337 582 ntTSL 2 BASIC14.68□□□□□ -0.06
HMGA1P17096 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC14.68□□□□□ -0.06
HMGA1P17096 ST5-261ENST00000626808 1071 ntTSL 5 BASIC14.68□□□□□ -0.06
HMGA1P17096 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC14.68□□□□□ -0.06
HMGA1P17096 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms