Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC12.3□□□□□ -0.44
SDCBPO00560 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
SDCBPO00560 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
SDCBPO00560 AC098614.1-201ENST00000368528 745 ntBASIC12.3□□□□□ -0.44
SDCBPO00560 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC12.3□□□□□ -0.44
SDCBPO00560 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 AC004945.1-201ENST00000416738 983 ntBASIC12.3□□□□□ -0.44
SDCBPO00560 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC12.3□□□□□ -0.44
SDCBPO00560 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 AC245100.3-201ENST00000441281 285 ntBASIC12.3□□□□□ -0.44
SDCBPO00560 AL355864.2-201ENST00000447420 863 ntBASIC12.3□□□□□ -0.44
SDCBPO00560 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
SDCBPO00560 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC12.3□□□□□ -0.44
SDCBPO00560 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC12.3□□□□□ -0.44
SDCBPO00560 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC12.3□□□□□ -0.44
SDCBPO00560 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC12.3□□□□□ -0.44
SDCBPO00560 COQ6-210ENST00000554920 649 ntTSL 3 BASIC12.3□□□□□ -0.44
SDCBPO00560 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC12.3□□□□□ -0.44
SDCBPO00560 MIR5189-201ENST00000577370 114 ntBASIC12.3□□□□□ -0.44
SDCBPO00560 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC12.3□□□□□ -0.44
SDCBPO00560 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC12.3□□□□□ -0.44
SDCBPO00560 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC12.3□□□□□ -0.44
SDCBPO00560 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC12.3□□□□□ -0.44
SDCBPO00560 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
SDCBPO00560 RIPK4-201ENST00000332512 3889 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 AL138725.1-201ENST00000407347 1314 ntBASIC12.3□□□□□ -0.44
SDCBPO00560 TUBB8P4-201ENST00000511806 1324 ntBASIC12.3□□□□□ -0.44
SDCBPO00560 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC12.3□□□□□ -0.44
SDCBPO00560 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC12.3□□□□□ -0.44
SDCBPO00560 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
SDCBPO00560 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SDCBPO00560 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC12.29□□□□□ -0.44
SDCBPO00560 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC12.29□□□□□ -0.44
SDCBPO00560 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 AC139712.1-201ENST00000378256 1875 ntBASIC12.29□□□□□ -0.44
SDCBPO00560 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC12.29□□□□□ -0.44
SDCBPO00560 GOLGA8IP-202ENST00000611635 2100 ntBASIC12.29□□□□□ -0.44
SDCBPO00560 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
SDCBPO00560 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC12.29□□□□□ -0.44
SDCBPO00560 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC12.29□□□□□ -0.44
SDCBPO00560 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC12.29□□□□□ -0.44
SDCBPO00560 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC12.29□□□□□ -0.44
SDCBPO00560 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC12.29□□□□□ -0.44
SDCBPO00560 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC12.29□□□□□ -0.44
SDCBPO00560 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
SDCBPO00560 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
SDCBPO00560 SERF2-209ENST00000409646 559 ntTSL 4 BASIC12.29□□□□□ -0.44
SDCBPO00560 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC12.29□□□□□ -0.44
SDCBPO00560 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC12.29□□□□□ -0.44
SDCBPO00560 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
SDCBPO00560 SORD2P-201ENST00000558556 1069 ntBASIC12.29□□□□□ -0.44
SDCBPO00560 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC12.29□□□□□ -0.44
SDCBPO00560 AC103988.2-201ENST00000561804 725 ntBASIC12.29□□□□□ -0.44
SDCBPO00560 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC12.29□□□□□ -0.44
SDCBPO00560 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
SDCBPO00560 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC12.29□□□□□ -0.44
SDCBPO00560 ENPP7P14-201ENST00000621765 1040 ntBASIC12.29□□□□□ -0.44
SDCBPO00560 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
SDCBPO00560 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC12.29□□□□□ -0.44
SDCBPO00560 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms