Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 ISCA2P1-201ENST00000425548 448 ntBASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 AC012618.1-201ENST00000461223 412 ntBASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 AC245884.6-201ENST00000515672 1067 ntBASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 AC097724.1-201ENST00000609581 426 ntBASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 AC092299.1-201ENST00000632679 757 ntBASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A3BPQ9Y5P4 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 NUP210P1-202ENST00000504322 710 ntBASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 AC003686.1-201ENST00000550956 1034 ntBASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 RN7SL574P-201ENST00000581512 297 ntBASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 AC021016.3-201ENST00000608367 477 ntBASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 KRT8P24-201ENST00000560290 1559 ntBASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A3BPQ9Y5P4 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 AHCYP4-201ENST00000419201 1315 ntBASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 AC006335.1-201ENST00000445200 547 ntBASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 UPF3AP2-201ENST00000457924 1132 ntBASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 AC124068.2-201ENST00000569473 1109 ntBASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC16.06■□□□□ 0.16
COL4A3BPQ9Y5P4 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms