Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 ATP5G2P4-201ENST00000442175 420 ntBASIC11.67□□□□□ -0.54
CX3CL1P78423 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC11.67□□□□□ -0.54
CX3CL1P78423 CICP12-201ENST00000455801 843 ntBASIC11.67□□□□□ -0.54
CX3CL1P78423 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC11.67□□□□□ -0.54
CX3CL1P78423 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC11.67□□□□□ -0.54
CX3CL1P78423 AC119751.2-201ENST00000504529 210 ntBASIC11.67□□□□□ -0.54
CX3CL1P78423 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC11.67□□□□□ -0.54
CX3CL1P78423 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC11.67□□□□□ -0.54
CX3CL1P78423 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC11.67□□□□□ -0.54
CX3CL1P78423 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC11.67□□□□□ -0.54
CX3CL1P78423 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC11.67□□□□□ -0.54
CX3CL1P78423 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC11.67□□□□□ -0.54
CX3CL1P78423 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC11.67□□□□□ -0.54
CX3CL1P78423 IFT20-216ENST00000588477 774 ntTSL 5 BASIC11.67□□□□□ -0.54
CX3CL1P78423 MIR6074-201ENST00000612054 107 ntBASIC11.67□□□□□ -0.54
CX3CL1P78423 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC11.67□□□□□ -0.54
CX3CL1P78423 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC11.67□□□□□ -0.54
CX3CL1P78423 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
CX3CL1P78423 AC015909.5-201ENST00000624336 2266 ntBASIC11.67□□□□□ -0.54
CX3CL1P78423 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC11.67□□□□□ -0.54
CX3CL1P78423 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CX3CL1P78423 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC11.66□□□□□ -0.54
CX3CL1P78423 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 AL023775.1-201ENST00000454907 1746 ntBASIC11.66□□□□□ -0.54
CX3CL1P78423 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 AC015818.8-201ENST00000587907 1519 ntBASIC11.66□□□□□ -0.54
CX3CL1P78423 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC11.66□□□□□ -0.54
CX3CL1P78423 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
CX3CL1P78423 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
CX3CL1P78423 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
CX3CL1P78423 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC11.66□□□□□ -0.54
CX3CL1P78423 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
CX3CL1P78423 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC11.66□□□□□ -0.54
CX3CL1P78423 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
CX3CL1P78423 GK-202ENST00000378941 458 ntTSL 3 BASIC11.66□□□□□ -0.54
CX3CL1P78423 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
CX3CL1P78423 AC010141.1-201ENST00000411585 623 ntBASIC11.66□□□□□ -0.54
CX3CL1P78423 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC11.66□□□□□ -0.54
CX3CL1P78423 FAM21FP-201ENST00000426241 1131 ntBASIC11.66□□□□□ -0.54
CX3CL1P78423 PTPA-215ENST00000432124 567 ntTSL 4 BASIC11.66□□□□□ -0.54
CX3CL1P78423 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC11.66□□□□□ -0.54
CX3CL1P78423 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC11.66□□□□□ -0.54
CX3CL1P78423 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC11.66□□□□□ -0.54
CX3CL1P78423 DUX4L45-201ENST00000566406 1057 ntBASIC11.66□□□□□ -0.54
CX3CL1P78423 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC11.66□□□□□ -0.54
CX3CL1P78423 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
CX3CL1P78423 MIR4741-201ENST00000579822 90 ntBASIC11.66□□□□□ -0.54
CX3CL1P78423 MIR4259-201ENST00000584466 101 ntBASIC11.66□□□□□ -0.54
CX3CL1P78423 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC11.66□□□□□ -0.54
CX3CL1P78423 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 MAPT-IT1-201ENST00000624111 3016 ntBASIC11.66□□□□□ -0.54
CX3CL1P78423 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC11.66□□□□□ -0.54
CX3CL1P78423 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
CX3CL1P78423 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
CX3CL1P78423 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC11.66□□□□□ -0.54
CX3CL1P78423 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC11.66□□□□□ -0.54
CX3CL1P78423 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
CX3CL1P78423 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
CX3CL1P78423 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CX3CL1P78423 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC11.65□□□□□ -0.54
CX3CL1P78423 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
CX3CL1P78423 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC11.65□□□□□ -0.54
CX3CL1P78423 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms