Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 CICP13-201ENST00000422015 2789 ntBASIC12.56□□□□□ -0.4
COL8A1P27658 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC12.56□□□□□ -0.4
COL8A1P27658 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
COL8A1P27658 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
COL8A1P27658 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC12.56□□□□□ -0.4
COL8A1P27658 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
COL8A1P27658 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
COL8A1P27658 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC12.56□□□□□ -0.4
COL8A1P27658 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC12.56□□□□□ -0.4
COL8A1P27658 ALG3P1-201ENST00000508806 1114 ntBASIC12.56□□□□□ -0.4
COL8A1P27658 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC12.56□□□□□ -0.4
COL8A1P27658 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC12.56□□□□□ -0.4
COL8A1P27658 AP002336.2-201ENST00000528607 539 ntTSL 5 BASIC12.56□□□□□ -0.4
COL8A1P27658 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC12.56□□□□□ -0.4
COL8A1P27658 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC12.56□□□□□ -0.4
COL8A1P27658 AC003686.1-201ENST00000550956 1034 ntBASIC12.56□□□□□ -0.4
COL8A1P27658 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC12.56□□□□□ -0.4
COL8A1P27658 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC12.56□□□□□ -0.4
COL8A1P27658 KRT8P1-201ENST00000557533 1207 ntBASIC12.56□□□□□ -0.4
COL8A1P27658 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC12.56□□□□□ -0.4
COL8A1P27658 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
COL8A1P27658 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC12.56□□□□□ -0.4
COL8A1P27658 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC12.56□□□□□ -0.4
COL8A1P27658 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC12.56□□□□□ -0.4
COL8A1P27658 CR392039.1-201ENST00000623217 204 ntBASIC12.56□□□□□ -0.4
COL8A1P27658 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
COL8A1P27658 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC12.56□□□□□ -0.4
COL8A1P27658 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
COL8A1P27658 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL8A1P27658 AL136172.1-201ENST00000598590 1394 ntBASIC12.56□□□□□ -0.4
COL8A1P27658 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
COL8A1P27658 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC12.55□□□□□ -0.4
COL8A1P27658 MGA-212ENST00000619521 1496 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 ST20-AS1-201ENST00000560255 4223 ntBASIC12.55□□□□□ -0.4
COL8A1P27658 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 RPL5P21-201ENST00000404620 815 ntBASIC12.55□□□□□ -0.4
COL8A1P27658 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC12.55□□□□□ -0.4
COL8A1P27658 PSAT1P2-201ENST00000426107 972 ntBASIC12.55□□□□□ -0.4
COL8A1P27658 AC027612.2-202ENST00000445955 1199 ntBASIC12.55□□□□□ -0.4
COL8A1P27658 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 BPIFB5P-201ENST00000457066 1099 ntBASIC12.55□□□□□ -0.4
COL8A1P27658 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC12.55□□□□□ -0.4
COL8A1P27658 AC008026.2-201ENST00000495438 348 ntBASIC12.55□□□□□ -0.4
COL8A1P27658 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC12.55□□□□□ -0.4
COL8A1P27658 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
COL8A1P27658 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC12.55□□□□□ -0.4
COL8A1P27658 AC013553.1-201ENST00000560906 267 ntBASIC12.55□□□□□ -0.4
COL8A1P27658 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC12.55□□□□□ -0.4
COL8A1P27658 HNRNPA1P16-201ENST00000575692 955 ntBASIC12.55□□□□□ -0.4
COL8A1P27658 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC12.55□□□□□ -0.4
COL8A1P27658 SIGLEC22P-201ENST00000599104 714 ntBASIC12.55□□□□□ -0.4
COL8A1P27658 AL136370.1-201ENST00000608166 691 ntBASIC12.55□□□□□ -0.4
COL8A1P27658 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC12.55□□□□□ -0.4
COL8A1P27658 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
COL8A1P27658 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
COL8A1P27658 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC12.55□□□□□ -0.4
COL8A1P27658 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC12.55□□□□□ -0.4
COL8A1P27658 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC12.55□□□□□ -0.4
COL8A1P27658 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 R3HDM2P2-201ENST00000401880 2116 ntBASIC12.55□□□□□ -0.4
COL8A1P27658 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
COL8A1P27658 WASH3P-207ENST00000560956 1394 ntBASIC12.55□□□□□ -0.4
COL8A1P27658 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL8A1P27658 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms