Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.04■□□□□ -0
RB1P06400 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
RB1P06400 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.04■□□□□ -0
RB1P06400 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.04■□□□□ -0
RB1P06400 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RB1P06400 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
RB1P06400 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.03■□□□□ -0
RB1P06400 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.03■□□□□ -0
RB1P06400 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RB1P06400 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.03■□□□□ -0
RB1P06400 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
RB1P06400 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
RB1P06400 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
RB1P06400 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
RB1P06400 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
RB1P06400 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RB1P06400 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
RB1P06400 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.03■□□□□ -0
RB1P06400 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
RB1P06400 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RB1P06400 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RB1P06400 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RB1P06400 NHP2P1-201ENST00000335274 462 ntBASIC15.03■□□□□ -0
RB1P06400 PIFO-201ENST00000369737 746 ntTSL 2 BASIC15.03■□□□□ -0
RB1P06400 SSR4-202ENST00000370085 526 ntTSL 2 BASIC15.03■□□□□ -0
RB1P06400 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.03■□□□□ -0
RB1P06400 AC103592.1-201ENST00000394513 664 ntBASIC15.03■□□□□ -0
RB1P06400 ABCD1P4-201ENST00000399687 604 ntBASIC15.03■□□□□ -0
RB1P06400 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC15.03■□□□□ -0
RB1P06400 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
RB1P06400 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC15.03■□□□□ -0
RB1P06400 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC15.03■□□□□ -0
RB1P06400 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC15.03■□□□□ -0
RB1P06400 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC15.03■□□□□ -0
RB1P06400 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC15.03■□□□□ -0
RB1P06400 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
RB1P06400 GOLGA2P8-201ENST00000505201 779 ntBASIC15.03■□□□□ -0
RB1P06400 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.03■□□□□ -0
RB1P06400 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC15.03■□□□□ -0
RB1P06400 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC15.03■□□□□ -0
RB1P06400 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.03■□□□□ -0
RB1P06400 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.03■□□□□ -0
RB1P06400 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
RB1P06400 C8orf49-201ENST00000525043 1968 ntBASIC15.03■□□□□ -0
RB1P06400 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.03■□□□□ -0
RB1P06400 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
RB1P06400 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.03■□□□□ -0
RB1P06400 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RB1P06400 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.03■□□□□ -0
RB1P06400 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.03■□□□□ -0
RB1P06400 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.03■□□□□ -0
RB1P06400 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.03■□□□□ -0
RB1P06400 TBC1D27-202ENST00000424239 1573 ntBASIC15.02■□□□□ -0
RB1P06400 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
RB1P06400 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RB1P06400 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC15.02■□□□□ -0
RB1P06400 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.02■□□□□ -0
RB1P06400 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.02■□□□□ -0
RB1P06400 AC023157.3-201ENST00000619086 2088 ntBASIC15.02■□□□□ -0
RB1P06400 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC15.02■□□□□ -0
RB1P06400 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RB1P06400 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
RB1P06400 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
RB1P06400 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
RB1P06400 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
RB1P06400 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.02■□□□□ -0
RB1P06400 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
RB1P06400 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
RB1P06400 SHMT1P1-201ENST00000419974 1312 ntBASIC15.02■□□□□ -0
RB1P06400 ENPP7P8-202ENST00000527856 1345 ntBASIC15.02■□□□□ -0
RB1P06400 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.02■□□□□ -0
RB1P06400 AC215219.1-201ENST00000400706 1817 ntBASIC15.02■□□□□ -0
RB1P06400 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.02■□□□□ -0
RB1P06400 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
RB1P06400 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC15.02■□□□□ -0
RB1P06400 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC15.02■□□□□ -0
RB1P06400 UROS-201ENST00000368774 744 ntTSL 2 BASIC15.02■□□□□ -0
RB1P06400 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC15.02■□□□□ -0
RB1P06400 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC15.02■□□□□ -0
RB1P06400 SERBP1P2-201ENST00000436888 1164 ntBASIC15.02■□□□□ -0
RB1P06400 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC15.02■□□□□ -0
RB1P06400 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC15.02■□□□□ -0
RB1P06400 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC15.02■□□□□ -0
RB1P06400 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC15.02■□□□□ -0
RB1P06400 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
RB1P06400 AL136982.5-201ENST00000605222 294 ntBASIC15.02■□□□□ -0
RB1P06400 PLS3-210ENST00000626746 216 ntTSL 4 BASIC15.02■□□□□ -0
RB1P06400 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC15.02■□□□□ -0
RB1P06400 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC15.02□□□□□ -0.01
RB1P06400 AC138035.3-201ENST00000622706 2791 ntBASIC15.02□□□□□ -0.01
RB1P06400 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
RB1P06400 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC15.02□□□□□ -0.01
RB1P06400 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
RB1P06400 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
RB1P06400 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
RB1P06400 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
RB1P06400 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
RB1P06400 AC006486.2-201ENST00000624246 2199 ntBASIC15.02□□□□□ -0.01
RB1P06400 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.02□□□□□ -0.01
RB1P06400 AL109954.1-202ENST00000564051 2148 ntBASIC15.02□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms