Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC28BQ9BUN5 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 LINC01301-202ENST00000506428 2444 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 DPP10-201ENST00000310323 3052 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 IGHG1-202ENST00000390548 2619 ntAPPRIS P5 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 PTPN5-203ENST00000396168 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 AC055876.3-201ENST00000431496 288 ntBASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 AC022137.2-201ENST00000503482 481 ntBASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 CLUHP6-201ENST00000580789 941 ntBASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 AC138649.4-201ENST00000612222 287 ntBASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 PDIA3P1-201ENST00000471856 1510 ntBASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC28BQ9BUN5 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 AL355102.3-201ENST00000554299 1678 ntBASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 YTHDF3-201ENST00000517371 3122 ntTSL 3 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 RN7SKP175-201ENST00000408472 289 ntBASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 MRPS18AP1-201ENST00000414458 589 ntBASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 AC079781.4-201ENST00000641908 219 ntBASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms