Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 IRF3-215ENST00000596822 823 ntTSL 3 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 AC004923.1-202ENST00000642106 209 ntBASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 AL139158.3-201ENST00000641212 1562 ntBASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC14.61□□□□□ -0.07
SHROOM3Q8TF72 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 HNRNPA1P41-201ENST00000397777 928 ntBASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 CROT-203ENST00000419147 2959 ntTSL 2 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 AC079336.7-201ENST00000623428 1078 ntBASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 PARVG-202ENST00000415224 999 ntTSL 2 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 HMGA1P1-201ENST00000415560 1062 ntBASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 OR8T1P-201ENST00000421347 918 ntBASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 TSPY25P-201ENST00000429463 745 ntBASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 SNORD3B-2-202ENST00000571722 791 ntBASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 AC130686.1-201ENST00000622936 2466 ntBASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14.6□□□□□ -0.07
SHROOM3Q8TF72 AC068760.1-201ENST00000493579 1953 ntBASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 STK3-218ENST00000617590 2485 ntTSL 5 BASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 AC016700.1-201ENST00000429424 312 ntBASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 RN7SL277P-201ENST00000481521 288 ntBASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 SYT17-208ENST00000568433 812 ntTSL 3 BASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC14.59□□□□□ -0.07
SHROOM3Q8TF72 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms