Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VCPP55072 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC15.47■□□□□ 0.07
VCPP55072 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VCPP55072 MIR4649-201ENST00000582839 64 ntBASIC15.47■□□□□ 0.07
VCPP55072 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC15.47■□□□□ 0.07
VCPP55072 AC051619.9-201ENST00000623237 597 ntBASIC15.47■□□□□ 0.07
VCPP55072 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
VCPP55072 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC15.47■□□□□ 0.07
VCPP55072 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VCPP55072 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VCPP55072 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VCPP55072 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VCPP55072 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC15.47■□□□□ 0.07
VCPP55072 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VCPP55072 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC15.46■□□□□ 0.07
VCPP55072 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
VCPP55072 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
VCPP55072 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC15.46■□□□□ 0.07
VCPP55072 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC15.46■□□□□ 0.07
VCPP55072 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC15.46■□□□□ 0.07
VCPP55072 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC15.46■□□□□ 0.07
VCPP55072 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC15.46■□□□□ 0.07
VCPP55072 RN7SKP175-201ENST00000408472 289 ntBASIC15.46■□□□□ 0.07
VCPP55072 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
VCPP55072 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC15.46■□□□□ 0.07
VCPP55072 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC15.46■□□□□ 0.07
VCPP55072 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
VCPP55072 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC15.46■□□□□ 0.07
VCPP55072 AP002803.1-201ENST00000528836 498 ntBASIC15.46■□□□□ 0.07
VCPP55072 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC15.46■□□□□ 0.07
VCPP55072 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC15.46■□□□□ 0.07
VCPP55072 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
VCPP55072 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC15.46■□□□□ 0.07
VCPP55072 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC15.46■□□□□ 0.07
VCPP55072 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC15.46■□□□□ 0.07
VCPP55072 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC15.46■□□□□ 0.07
VCPP55072 IRF3-215ENST00000596822 823 ntTSL 3 BASIC15.46■□□□□ 0.07
VCPP55072 AC103810.10-201ENST00000606504 343 ntBASIC15.46■□□□□ 0.07
VCPP55072 AC138696.2-201ENST00000607376 223 ntBASIC15.46■□□□□ 0.07
VCPP55072 AP003392.6-201ENST00000607709 325 ntBASIC15.46■□□□□ 0.07
VCPP55072 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC15.46■□□□□ 0.07
VCPP55072 AC090164.2-201ENST00000611487 516 ntBASIC15.46■□□□□ 0.07
VCPP55072 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
VCPP55072 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC15.46■□□□□ 0.07
VCPP55072 AC007718.1-201ENST00000621078 280 ntBASIC15.46■□□□□ 0.07
VCPP55072 PCBP2-OT1-201ENST00000634357 590 ntBASIC15.46■□□□□ 0.07
VCPP55072 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC15.46■□□□□ 0.07
VCPP55072 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VCPP55072 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC15.46■□□□□ 0.07
VCPP55072 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
VCPP55072 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC15.46■□□□□ 0.06
VCPP55072 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
VCPP55072 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
VCPP55072 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
VCPP55072 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
VCPP55072 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
VCPP55072 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC15.46■□□□□ 0.06
VCPP55072 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VCPP55072 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VCPP55072 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
VCPP55072 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.45■□□□□ 0.06
VCPP55072 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC15.45■□□□□ 0.06
VCPP55072 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
VCPP55072 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC15.45■□□□□ 0.06
VCPP55072 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
VCPP55072 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC15.45■□□□□ 0.06
VCPP55072 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC15.45■□□□□ 0.06
VCPP55072 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
VCPP55072 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
VCPP55072 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
VCPP55072 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VCPP55072 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VCPP55072 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
VCPP55072 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VCPP55072 AP000593.2-201ENST00000542775 1433 ntBASIC15.45■□□□□ 0.06
VCPP55072 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
VCPP55072 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms