Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 KRT8P35-201ENST00000483942 1338 ntBASIC11.89□□□□□ -0.51
CDX1P47902 POU2F2-216ENST00000560558 3282 ntTSL 5 BASIC11.89□□□□□ -0.51
CDX1P47902 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC11.89□□□□□ -0.51
CDX1P47902 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
CDX1P47902 MSTO2P-201ENST00000314835 1709 ntBASIC11.89□□□□□ -0.51
CDX1P47902 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
CDX1P47902 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
CDX1P47902 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 TMC5-204ENST00000541464 3581 ntTSL 2 BASIC11.89□□□□□ -0.51
CDX1P47902 C3orf38-201ENST00000318887 2633 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 RPS15-201ENST00000233609 534 ntTSL 2 BASIC11.89□□□□□ -0.51
CDX1P47902 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC11.89□□□□□ -0.51
CDX1P47902 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC11.89□□□□□ -0.51
CDX1P47902 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
CDX1P47902 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
CDX1P47902 ACTBP8-201ENST00000403258 1108 ntBASIC11.89□□□□□ -0.51
CDX1P47902 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 RPL7P3-201ENST00000441388 714 ntBASIC11.89□□□□□ -0.51
CDX1P47902 CTBP2P5-201ENST00000454986 1264 ntBASIC11.89□□□□□ -0.51
CDX1P47902 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC11.89□□□□□ -0.51
CDX1P47902 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC11.89□□□□□ -0.51
CDX1P47902 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC11.89□□□□□ -0.51
CDX1P47902 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC11.89□□□□□ -0.51
CDX1P47902 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC11.89□□□□□ -0.51
CDX1P47902 AP000812.2-201ENST00000538934 718 ntBASIC11.89□□□□□ -0.51
CDX1P47902 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
CDX1P47902 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC11.89□□□□□ -0.51
CDX1P47902 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC11.89□□□□□ -0.51
CDX1P47902 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC11.89□□□□□ -0.51
CDX1P47902 NAA38-206ENST00000576384 424 ntTSL 2 BASIC11.89□□□□□ -0.51
CDX1P47902 RPS15-205ENST00000586686 562 ntTSL 5 BASIC11.89□□□□□ -0.51
CDX1P47902 RPS15-208ENST00000591804 711 ntTSL 5 BASIC11.89□□□□□ -0.51
CDX1P47902 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
CDX1P47902 MIR6775-201ENST00000617557 69 ntBASIC11.89□□□□□ -0.51
CDX1P47902 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 KIF21B-204ENST00000461742 5428 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC11.89□□□□□ -0.51
CDX1P47902 C21orf62-AS1-201ENST00000382375 2453 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
CDX1P47902 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC11.89□□□□□ -0.51
CDX1P47902 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC11.89□□□□□ -0.51
CDX1P47902 SELPLG-203ENST00000550948 2256 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CDX1P47902 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC11.89□□□□□ -0.51
CDX1P47902 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 KRT8P24-201ENST00000560290 1559 ntBASIC11.88□□□□□ -0.51
CDX1P47902 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
CDX1P47902 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 ADAMTSL2-201ENST00000354484 4068 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 LINC01749-202ENST00000607802 3408 ntTSL 2 BASIC11.88□□□□□ -0.51
CDX1P47902 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC11.88□□□□□ -0.51
CDX1P47902 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC11.88□□□□□ -0.51
CDX1P47902 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 NUP54-201ENST00000264883 2367 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 ZBTB12BP-201ENST00000314232 1122 ntBASIC11.88□□□□□ -0.51
CDX1P47902 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC11.88□□□□□ -0.51
CDX1P47902 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC11.88□□□□□ -0.51
CDX1P47902 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC11.88□□□□□ -0.51
CDX1P47902 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC11.88□□□□□ -0.51
CDX1P47902 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
CDX1P47902 KLF2P2-201ENST00000416807 1039 ntBASIC11.88□□□□□ -0.51
CDX1P47902 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC11.88□□□□□ -0.51
CDX1P47902 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
CDX1P47902 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC11.88□□□□□ -0.51
CDX1P47902 FO681548.1-201ENST00000455617 1132 ntBASIC11.88□□□□□ -0.51
CDX1P47902 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC11.88□□□□□ -0.51
CDX1P47902 FTH1P14-201ENST00000482930 551 ntBASIC11.88□□□□□ -0.51
CDX1P47902 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC11.88□□□□□ -0.51
CDX1P47902 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC11.88□□□□□ -0.51
CDX1P47902 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC11.88□□□□□ -0.51
CDX1P47902 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC11.88□□□□□ -0.51
CDX1P47902 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC11.88□□□□□ -0.51
CDX1P47902 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC11.88□□□□□ -0.51
CDX1P47902 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC11.88□□□□□ -0.51
CDX1P47902 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC11.88□□□□□ -0.51
CDX1P47902 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC11.88□□□□□ -0.51
CDX1P47902 Six3os1_5.1-201ENST00000611000 271 ntBASIC11.88□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms