Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
CDH3P22223 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CDH3P22223 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC14.23□□□□□ -0.13
CDH3P22223 AC073869.1-201ENST00000415574 2762 ntBASIC14.23□□□□□ -0.13
CDH3P22223 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CDH3P22223 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC14.23□□□□□ -0.13
CDH3P22223 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CDH3P22223 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC14.23□□□□□ -0.13
CDH3P22223 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC14.23□□□□□ -0.13
CDH3P22223 CSH2-202ENST00000345366 598 ntTSL 5 BASIC14.23□□□□□ -0.13
CDH3P22223 SMS-201ENST00000379404 1174 ntTSL 3 BASIC14.23□□□□□ -0.13
CDH3P22223 SKA2-202ENST00000437036 625 ntTSL 2 BASIC14.23□□□□□ -0.13
CDH3P22223 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC14.23□□□□□ -0.13
CDH3P22223 AC106794.1-201ENST00000506935 792 ntBASIC14.23□□□□□ -0.13
CDH3P22223 AC005740.2-201ENST00000511085 419 ntBASIC14.23□□□□□ -0.13
CDH3P22223 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.23□□□□□ -0.13
CDH3P22223 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC14.23□□□□□ -0.13
CDH3P22223 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
CDH3P22223 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC14.23□□□□□ -0.13
CDH3P22223 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 AC009955.4-201ENST00000597192 544 ntBASIC14.23□□□□□ -0.13
CDH3P22223 AL451050.2-201ENST00000606967 682 ntBASIC14.23□□□□□ -0.13
CDH3P22223 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 AL162426.1-201ENST00000624141 743 ntBASIC14.23□□□□□ -0.13
CDH3P22223 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 AL133338.1-201ENST00000565695 1517 ntBASIC14.23□□□□□ -0.13
CDH3P22223 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC14.23□□□□□ -0.13
CDH3P22223 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC14.23□□□□□ -0.13
CDH3P22223 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC14.23□□□□□ -0.13
CDH3P22223 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.23□□□□□ -0.13
CDH3P22223 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CDH3P22223 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC14.23□□□□□ -0.13
CDH3P22223 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CDH3P22223 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH3P22223 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
CDH3P22223 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.22□□□□□ -0.13
CDH3P22223 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH3P22223 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CDH3P22223 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH3P22223 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CDH3P22223 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.22□□□□□ -0.13
CDH3P22223 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.22□□□□□ -0.13
CDH3P22223 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH3P22223 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC14.22□□□□□ -0.13
CDH3P22223 MRPL37P1-201ENST00000592451 1337 ntBASIC14.22□□□□□ -0.13
CDH3P22223 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.22□□□□□ -0.13
CDH3P22223 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
CDH3P22223 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH3P22223 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC14.22□□□□□ -0.13
CDH3P22223 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH3P22223 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.22□□□□□ -0.13
CDH3P22223 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH3P22223 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CDH3P22223 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC14.22□□□□□ -0.13
CDH3P22223 FAM58BP-201ENST00000439056 645 ntBASIC14.22□□□□□ -0.13
CDH3P22223 EIF4HP1-201ENST00000453115 687 ntBASIC14.22□□□□□ -0.13
CDH3P22223 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC14.22□□□□□ -0.13
CDH3P22223 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14.22□□□□□ -0.13
CDH3P22223 SCARNA20.5-201ENST00000516991 142 ntBASIC14.22□□□□□ -0.13
CDH3P22223 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.22□□□□□ -0.13
CDH3P22223 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC14.22□□□□□ -0.13
CDH3P22223 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CDH3P22223 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC14.22□□□□□ -0.13
CDH3P22223 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CDH3P22223 AC132192.2-201ENST00000596206 1147 ntBASIC14.22□□□□□ -0.13
CDH3P22223 KC6-205ENST00000599934 556 ntTSL 4 BASIC14.22□□□□□ -0.13
CDH3P22223 AC027601.3-201ENST00000622907 509 ntBASIC14.22□□□□□ -0.13
CDH3P22223 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH3P22223 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
CDH3P22223 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
CDH3P22223 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.22□□□□□ -0.13
CDH3P22223 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH3P22223 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC14.22□□□□□ -0.13
CDH3P22223 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.22□□□□□ -0.13
CDH3P22223 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CDH3P22223 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.22□□□□□ -0.13
CDH3P22223 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH3P22223 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms