Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC13.42□□□□□ -0.26
COL5A1P20908 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC13.42□□□□□ -0.26
COL5A1P20908 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC13.42□□□□□ -0.26
COL5A1P20908 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC13.42□□□□□ -0.26
COL5A1P20908 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.42□□□□□ -0.26
COL5A1P20908 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL5A1P20908 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL5A1P20908 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL5A1P20908 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
COL5A1P20908 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
COL5A1P20908 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL5A1P20908 PGAM1P11-201ENST00000416729 680 ntBASIC13.41□□□□□ -0.26
COL5A1P20908 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC13.41□□□□□ -0.26
COL5A1P20908 CDCA4P4-201ENST00000435216 680 ntBASIC13.41□□□□□ -0.26
COL5A1P20908 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL5A1P20908 AC079250.1-201ENST00000456046 531 ntBASIC13.41□□□□□ -0.26
COL5A1P20908 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC13.41□□□□□ -0.26
COL5A1P20908 BAK1P2-201ENST00000532665 631 ntBASIC13.41□□□□□ -0.26
COL5A1P20908 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL5A1P20908 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.41□□□□□ -0.26
COL5A1P20908 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL5A1P20908 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC13.41□□□□□ -0.26
COL5A1P20908 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
COL5A1P20908 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL5A1P20908 AC012617.1-204ENST00000586340 2305 ntBASIC13.41□□□□□ -0.26
COL5A1P20908 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL5A1P20908 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
COL5A1P20908 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL5A1P20908 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.41□□□□□ -0.26
COL5A1P20908 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL5A1P20908 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL5A1P20908 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
COL5A1P20908 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC13.41□□□□□ -0.26
COL5A1P20908 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC13.41□□□□□ -0.26
COL5A1P20908 SERBP1P2-201ENST00000436888 1164 ntBASIC13.41□□□□□ -0.26
COL5A1P20908 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC13.41□□□□□ -0.26
COL5A1P20908 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC13.41□□□□□ -0.26
COL5A1P20908 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL5A1P20908 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC13.41□□□□□ -0.26
COL5A1P20908 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL5A1P20908 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
COL5A1P20908 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL5A1P20908 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL5A1P20908 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC13.41□□□□□ -0.26
COL5A1P20908 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL5A1P20908 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC13.4□□□□□ -0.26
COL5A1P20908 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL5A1P20908 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.4□□□□□ -0.26
COL5A1P20908 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
COL5A1P20908 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL5A1P20908 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL5A1P20908 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL5A1P20908 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL5A1P20908 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
COL5A1P20908 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL5A1P20908 RPL10L-201ENST00000298283 812 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
COL5A1P20908 NHP2P1-201ENST00000335274 462 ntBASIC13.4□□□□□ -0.26
COL5A1P20908 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL5A1P20908 RPSAP12-201ENST00000435879 888 ntBASIC13.4□□□□□ -0.26
COL5A1P20908 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC13.4□□□□□ -0.26
COL5A1P20908 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC13.4□□□□□ -0.26
COL5A1P20908 GARS-210ENST00000627489 324 ntTSL 4 BASIC13.4□□□□□ -0.26
COL5A1P20908 AL139424.3-202ENST00000641619 917 ntBASIC13.4□□□□□ -0.26
COL5A1P20908 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC13.4□□□□□ -0.26
COL5A1P20908 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL5A1P20908 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC13.4□□□□□ -0.26
COL5A1P20908 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.4□□□□□ -0.26
COL5A1P20908 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL5A1P20908 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL5A1P20908 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL5A1P20908 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL5A1P20908 SALL4P6-201ENST00000429385 1691 ntBASIC13.4□□□□□ -0.26
COL5A1P20908 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.4□□□□□ -0.27
COL5A1P20908 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
COL5A1P20908 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.39□□□□□ -0.27
COL5A1P20908 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 171.2 ms